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A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node clathrin family, coding gene
Type: Family GRN ID: gf02023 Name: clathrin family, coding gene
Annotation: coding gene family, members include CLC2, AT2G20760, AT3G51890, AT3G08530
References:
  • Kitakura S, Vanneste S, Robert S, Löfke C, Teichmann T, Tanaka H, Friml J. Clathrin mediates endocytosis and polar distribution of PIN auxin transporters in Arabidopsis. Plant Cell. 2011 May;23(5):1920-31. doi: 10.1105/tpc.111.083030. Epub 2011 May 6. PubMed PMID: 21551390; PubMed Central PMCID: PMC3123958.
 
Pathways: Auxins;  Abscisic acid 
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 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
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Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 clathrin family, coding gene  --  interacts with  --  pin2/AGR
3 clathrin family, coding gene  --  interacts with  --  ATPIN1
4 clathrin family, coding gene  --  interacts with  --  RIC1
5 clathrin family, coding gene  --  interacts with  --  ARAC3; ATROP6; RAC3; RHO1PS; ROP6
6 clathrin family, coding gene  --  has family member  --  AT3G51890
7 clathrin family, coding gene  --  has family member  --  AT2G20760
8 clathrin family, coding gene  --  has family member  --  CLC2
9 clathrin family, coding gene  --  interacts with  --  pin2/AGR  --  interacts with  --  ALX8; ATSAL1; FRY1; HOS2; RON1; SAL1
10 clathrin family, coding gene  --  interacts with  --  pin2/AGR  --  interacts with  --  RCN1 ATB BETA BETA
11 clathrin family, coding gene  --  interacts with  --  pin2/AGR  --  interacts with  --  AtFYPP1; FYPP1
12 clathrin family, coding gene  --  interacts with  --  pin2/AGR  --  interacts with  --  AT4G16444
13 clathrin family, coding gene  --  interacts with  --  pin2/AGR  --  interacts with  --  AT3G21690
14 clathrin family, coding gene  --  interacts with  --  pin2/AGR  --  interacts with  --  CRK5; RLK6
15 clathrin family, coding gene  --  interacts with  --  pin2/AGR  --  has similar expression pattern (mutual information value=0.927024) with  --  AT2G25980
16 clathrin family, coding gene  --  interacts with  --  pin2/AGR  --  has similar expression pattern (mutual information value=0.907272) with  --  CYP705A8
17 clathrin family, coding gene  --  interacts with  --  pin2/AGR  --  has similar expression pattern (mutual information value=0.808201) with  --  AT2G34020
18 clathrin family, coding gene  --  interacts with  --  pin2/AGR  --  has similar expression pattern (mutual information value=0.829153) with  --  LBD13
19 clathrin family, coding gene  --  interacts with  --  pin2/AGR  --  has similar expression pattern (mutual information value=0.824798) with  --  AT4G28650
20 clathrin family, coding gene  --  interacts with  --  pin2/AGR  --  has similar expression pattern (mutual information value=0.907908) with  --  AT5G62340
21 clathrin family, coding gene  --  interacts with  --  pin2/AGR  --  has similar expression pattern (mutual information value=0.852022) with  --  GMD1
22 clathrin family, coding gene  --  interacts with  --  pin2/AGR  --  has similar expression pattern (mutual information value=0.864781) with  --  ATMYB66; MYB66; WER; WER1
23 clathrin family, coding gene  --  interacts with  --  pin2/AGR  --  has similar expression pattern (mutual information value=0.974083) with  --  AHK5; CKI2; HK5
24 clathrin family, coding gene  --  interacts with  --  pin2/AGR  --  transport  --  Ornithine
25 clathrin family, coding gene  --  interacts with  --  pin2/AGR  --  transport  --  Cl-
26 clathrin family, coding gene  --  interacts with  --  pin2/AGR  --  transport  --  Carnitine
27 clathrin family, coding gene  --  interacts with  --  pin2/AGR  --  transport  --  Adenine
28 clathrin family, coding gene  --  interacts with  --  pin2/AGR  --  is a member of  --  ATPIN1 family27, coding gene
29 clathrin family, coding gene  --  interacts with  --  pin2/AGR  --  is modified by  --  D6PK
30 clathrin family, coding gene  --  interacts with  --  pin2/AGR  --  is modified by  --  CRK
31 clathrin family, coding gene  --  interacts with  --  pin2/AGR  --  is modified by  --  WAG2
32 clathrin family, coding gene  --  interacts with  --  pin2/AGR  --  is modified by  --  ABR; PID
33 clathrin family, coding gene  --  interacts with  --  pin2/AGR  --  is modified by  --  PK3AT; WAG1
34 clathrin family, coding gene  --  interacts with  --  ATPIN1  --  is regulated by  --  ARR12
35 clathrin family, coding gene  --  interacts with  --  ATPIN1  --  is regulated by  --  ARR2
36 clathrin family, coding gene  --  interacts with  --  ATPIN1  --  is regulated by  --  ARF5
37 clathrin family, coding gene  --  interacts with  --  ATPIN1  --  is regulated by  --  ARF7
38 clathrin family, coding gene  --  interacts with  --  ATPIN1  --  is regulated by  --  ARF11
39 clathrin family, coding gene  --  interacts with  --  ATPIN1  --  is regulated by  --  ARF17
40 clathrin family, coding gene  --  interacts with  --  ATPIN1  --  is regulated by  --  ARF16
41 clathrin family, coding gene  --  interacts with  --  ATPIN1  --  is the target gene of  --  ath-miR5020a
42 clathrin family, coding gene  --  interacts with  --  ATPIN1  --  interacts with  --  SRF8
43 clathrin family, coding gene  --  interacts with  --  ATPIN1  --  interacts with  --  ADL1; ADL1A; AG68; DL1; DRP1A; RSW9
44 clathrin family, coding gene  --  interacts with  --  ATPIN1  --  interacts with  --  Phytochrome B (PhyB)
45 clathrin family, coding gene  --  interacts with  --  ATPIN1  --  interacts with  --  RIC4
46 clathrin family, coding gene  --  interacts with  --  ATPIN1  --  interacts with  --  ARAC4; ATRAC4; ATROP2; ROP2
47 clathrin family, coding gene  --  interacts with  --  ATPIN1  --  interacts with  --  AT3G13410
48 clathrin family, coding gene  --  interacts with  --  ATPIN1  --  interacts with  --  TOPP4
49 clathrin family, coding gene  --  interacts with  --  RIC1  --  interacts with  --  AAA1; ATKTN1; BOT1; ERH3; FRA2; FRC2; FTR; KTN1; LUE1
50 clathrin family, coding gene  --  interacts with  --  ARAC3; ATROP6; RAC3; RHO1PS; ROP6  --  interacts with  --  SCN1
51 clathrin family, coding gene  --  interacts with  --  ARAC3; ATROP6; RAC3; RHO1PS; ROP6  --  interacts with  --  ABP; ABP1
52 clathrin family, coding gene  --  interacts with  --  ARAC3; ATROP6; RAC3; RHO1PS; ROP6  --  interacts with  --  ATFTA; FTA; PFT/PGGT-IALPHA; PLP
53 clathrin family, coding gene  --  interacts with  --  ARAC3; ATROP6; RAC3; RHO1PS; ROP6  --  interacts with  --  ATGGT-IB; GGB; PGGT-I
54 clathrin family, coding gene  --  interacts with  --  ARAC3; ATROP6; RAC3; RHO1PS; ROP6  --  interacts with  --  AT-GDI1; ATGDI1; GDI1
55 clathrin family, coding gene  --  interacts with  --  ARAC3; ATROP6; RAC3; RHO1PS; ROP6  --  interacts with  --  ATROPGEF11; PIRF1; ROPGEF11
56 clathrin family, coding gene  --  has family member  --  CLC2  --  interacts with  --  CHC1
57 clathrin family, coding gene  --  has family member  --  CLC2  --  interacts with  --  TPLATE
58 clathrin family, coding gene  --  has family member  --  CLC2  --  interacts with  --  AT3G03000
59 clathrin family, coding gene  --  has family member  --  CLC2  --  interacts with  --  AT4G11380
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