LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

  • [G. soja (gene)]
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Selected organism and genome annotation version

SpeciesGlycine soja (wild soybean)
GenotypeW05
Genome annotation GsW05V1
DescriptionGlycine Soja, The Chinese University of Hong Kong, W05v1.0
# of genomic sequences 33,170
# of genes 50,399
# of transcripts 50,399
RNA-seq experiments / conditions / samples 4 / 48 / 149
Choose sequence type for expression analysis 50,399 genes       or       50,399 transcripts

Expression Profile

Normalize and compare gene expression level; Visualize gene expression level; Search genes by specified keywords, Coordinates and expression pattern
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Co-expression

Search co-expressed genes; Build co-expressed gene modules
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Differential Expression

Identify differentially expressed genes between two conditions/treatments
Choosing conditions

Pathway Enrichment Analysis

Identify possible function of gene group from your input or DE analysis
Gene Ontology analysis
KEGG pathway analysis

Homolog mapping

Mapping gene/transcript/CDS/protein to its correspondence in other genomes referring to their functional annotation, such as homolog or panther family ID
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BLAST

NCBI BLAST
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