LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

  • [T. subterraneum (gene)]
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Selected organism and genome annotation version

SpeciesTrifolium subterraneum (sub clover)
GenotypeDaliak
Genome annotation TsuV1.1
DescriptionTrifolium Subterraneum, Lab of Plant Genome Informatics Department of Plant Genome Research Kazusa DNA Research Institut, TSUd_r1.1
# of genomic sequences 27,424
# of genes 42,704
# of transcripts 42,704
RNA-seq experiments / conditions / samples 1 / 4 / 12
Choose sequence type for expression analysis 41,942 genes       or       41,942 transcripts

Expression Profile

Normalize and compare gene expression level; Visualize gene expression level; Search genes by specified keywords, Coordinates and expression pattern
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Co-expression

Search co-expressed genes; Build co-expressed gene modules
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Differential Expression

Identify differentially expressed genes between two conditions/treatments
Choosing conditions

Pathway Enrichment Analysis

Identify possible function of gene group from your input or DE analysis
Gene Ontology analysis
KEGG pathway analysis

Homolog mapping

Mapping gene/transcript/CDS/protein to its correspondence in other genomes referring to their functional annotation, such as homolog or panther family ID
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BLAST

NCBI BLAST
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