LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

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Selected organism and genome annotation version

SpeciesArachis hypogaea (goober, ground-nut, peanut)
GenotypeTifrunner
Genome annotation AhV1
DescriptionArachis Hypogaea, Iowa State University, arahy.Tifrunner.gnm1.KYV3
# of genomic sequences 120
# of genes 67,124
# of transcripts 84,714
RNA-seq experiments / conditions / samples 4 / 33 / 75
Choose sequence type for expression analysis 67,124 genes       or       84,714 transcripts

Expression Profile

Normalize and compare gene expression level; Visualize gene expression level; Search genes by specified keywords, Coordinates and expression pattern
Start from choosing samples
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Co-expression

Search co-expressed genes; Build co-expressed gene modules
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Differential Expression

Identify differentially expressed genes between two conditions/treatments
Choosing conditions

Pathway Enrichment Analysis

Identify possible function of gene group from your input or DE analysis
Gene Ontology analysis
KEGG pathway analysis

Homolog mapping

Mapping gene/transcript/CDS/protein to its correspondence in other genomes referring to their functional annotation, such as homolog or panther family ID
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BLAST

NCBI BLAST
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