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• Arabidopsis thaliana (thale cress, thale-cress, mouse-ear cress);
  col Araport11
• Arachis duranensis ;
  V14167 AdV1.1
• Arachis hypogaea (goober, ground-nut, peanut);
  Tifrunner AhV1
• Arachis ipaensis ;
  K30076 AiV1.1
• Cajanus cajan (pigeon pea);
  CcV1
• Cicer arietinum (chickpea, garbanzo);
  ICC 4958 CaV2
• Glycine max (soybeans, soybean);
  Wm82 Gm275Wm82a2V1
• Glycine max (soybeans, soybean);
  Wm82 Gm508Wm82a4V1
• Glycine soja (wild soybean);
  W05 GsW05V1
• Hordeum vulgare (barley);
  vulgare L Hvulgare462r1
• Lotus japonicus ;
  MG20 LjMG20V3
• Lupinus angustifolius (narrow-leaved blue lupine);
  Tanjil LaV1
• Medicago sativa (lucerne, alfalfa);
  CADL MsV1NR
• Medicago truncatula (barrel medic);
  A17 MtV4.0
• Medicago truncatula (barrel medic);
  A17 MtrunA17r5.0
• Oryza sativa (rice);
  Japonica Osativa323V7
• Phaseolus vulgaris (string bean, French bean, kidney bean);
  Pv442V2.1
• Populus trichocarpa (western balsam poplar, black cottonwood);
  PtV3.1
• Solanum lycopersicum (tomato);
  ITAG3.2
• Trifolium pratense (purple clover, red clover, peavine clover, rotklee);
  Tp385V2
• Trifolium subterraneum (sub clover);
  Daliak TsuV1.1
• Vigna angularis (red mung bean, azuki bean, adzuki bean);
  Gyeongwon IT213134 Va
• Vigna radiata (mung bean);
  VC1973A Vr
• Vigna unguiculata (cowpea);
  Vu469V1.1

Introduction

Legumes have contributed to human health, sustainable food and feed production worldwide for centuries. The study of model legumes has played vital roles in deciphering key genes, pathways, and networks regulating biological mechanisms and agronomic traits. Along with emerging breeding technology such as genome editing, translation of the knowledge gained from model plants to crops is in high demand.

The updated database (V3) was redesigned for translational genomics targeting the discovery of novel key genes in less-studied non-model legume crops by referring to the knowledge gained in model legumes. The database contains genomic data for all 22 included species, and transcriptomic data covering thousands of RNA-seq samples mostly from model species.

The rich biological data and analytic tools for gene expression and pathway analyses can be used to decipher critical genes, pathways, and networks in model legumes. The integrated comparative genomic functions further facilitate the translation of this knowledge to legume crops. Therefore, the database will be a valuable resource to identify important genes regulating specific biological mechanisms or agronomic traits in the non-model yet economically significant legume crops.

LegumeIP V3 is available free to the public at https://plantgrn.noble.org/LegumeIP. Access to the database does not require login, registration, or password.

Click here to access LegumeIP V2