Module Description

• KMC2D is a GPU empowered pipeline, which can speed up the epistatic kinship matrix calculating.
• KMC2D was developed in Linux at the GPU environment of Telsa K80, the host and kernel code are written in C++, and packed as a whole file KMC2D.cu , then compiled through a makefile deployed with NVCC (9.0). KMC2D have been successfully compiled and tested in our linux system. User can freely download, modify and compile the source code without restriction.

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Test Dataset

• Genotype Matrix Files 1.)Additive Effect Z_Matrix 2.)Domiance Effect W_Matrix
• Resulting Kinship Matrix Files : 1.) Additive-Additive KinshipMatrix2D_AA, 2.) Additive-Domiance KinshipMatrix2D_AD, 3.) Domiance-DomianceKinshipMatrix2D_DD

Source Code

• KMC2D CUDA Source CodeKMC2D_Source_Code