| Web Servers |
| psRNATarget |
A plant small RNA target analysis server |
PMID: 29718424, 21622958 |
| pssRNAit |
A web server for designing effective and specific plant siRNAs with genome-wide off-target assessment |
PMID: 32651189 |
| GWASPRO |
A high-performance genome-wide association analysis server |
PMID: 30508039 |
| PIP_SNP |
Pipelines for Preprocessing Genotyped SNP Data Featured as LD Bin Mapping, Missing Genotype Imputing, and LD Bin Marker Synthesizing |
PMID: 34235432 |
| KMC1D * |
A GPU-empowered parallel computing pipeline for main effect (1D) Kinship matrix calculation |
PMID: 33575561 |
| KMC2D * |
A GPU-empowered parallel computing pipeline for epistatic effect (2D) Kinship matrix calculation |
PMID: 33575561 |
| PATOWAS |
A pipeline for trait analysis in 'ome'-wide association studies |
PMID: 30272029 |
| MAD-HiDTree |
Distinguishing HapMap accessions through recursive set partitioning in hierarchical decision trees |
PMID: 33613609 |
| PlantTFcat |
An online plant transcription factor and transcriptional regulator categorization and analysis tools |
PMID: 24219505 |
| PEPIS |
A pipeline for estimating epistatic effect in linkage mapping and genome-wide association studies |
PMID: 27224861 |
| TrSSP |
Prediction of membrane transport proteins and their substrate specificities using primary sequence information |
PMID: 24968309 |
| DeGNServer |
Deciphering genome-scale gene-gene interaction network through high performance reverse engineering analysis |
PMID: 24328032 |
| GPLEXUS |
GPLEXUS: enabling genome-scale gene association network reconstruction and analysis for very large-scale expression data |
PMID: 24178033 |
| AtSubP |
The Arabidopsis subcellular localization prediction server |
PMID: 20647376 |
| Online tools |
| AffyMap |
Affymetrix probe-set mapping tool |
|
| GMEF |
Genotype marker extraction and filtering |
|
| MPlot |
An Online Tool drawing Manhattan Plot |
|
| QQPlot |
QQ-plot generator |
|
| Databases |
| LegumeIP |
LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes |
PMID: 33166388, 26578557, 22110036 |
| HRGRN |
A Graph search-empowered integrative database of Arabidopsis signaling transduction, metabolism and gene regulation networks |
PMID: 26657893 |
| MtSSPdb |
The Medicago truncatula small secreted peptide database |
PMID: 32079733 |
| Puccinia novopanici |
A genomic data resource for Puccinia novopanici |
PMID: 31050598 |
| PvGEA |
Common Beam Gene Expression Atlas and Network Analysis |
PMID: 25283805 |
| TrichOME |
A comparative 'omics' database for plant trichome |
PMID: 19939948 |
| MPP |
Phenylpropanoids and plant defense -- an updated genomic perspective |
PMID: 21029326 |
| Manuscript Resources |
| MPageRank |
Mining functional modules in heterogeneous biological networks using multiplex PageRank approach |
PMID: 27446133 |
| MET-XAlign |
A metabolite cross-alignment tool for LC-MS based comparative metabolomics |
PMID: 26247233 |
| MET-COFEA |
A liquid chromatography/mass spectrometry data processing platform for metabolite compound feature extraction and annotation |
PMID: 24856452 |
| MET-COFEI |
A novel gas chromatography-mass spectrometry data Processing platform for metabolite compound feature extraction and identification |
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