Welcome to HRGRN: A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks

	Screen Resolution:
	Welcome to HRGRN A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks

Location: Home > Details for node AT5G07940

Type: Protein	GRN ID: np36444	Name:
Annotation:	BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G07980.1); Has 1906 Blast hits to 1127 proteins in 203 species: Archae - 2; Bacteria - 210; Metazoa - 401; Fungi - 205; Plants - 136; Viruses - 0; Other Eukaryotes - 952 (source: NCBI BLink).
Gene Locus:	AT5G07940
Gene Expression (Affy ATH1 probeset):	250602_s_at

Choose color for highlight:

Display edge: validated and predicted
Display node/edge prompt:
Layout:
as format

Protein modification

Protein-protein interaction
also include predicted relationship

Compound-protein interaction

TF-target gene regulation

Small RNA-target regulation
also include predicted relationship

Carrier and transported molecule

Catalytic chemical reaction

Co-expressed gene pair
with mutual information value >

Ignore nodes having > relationships

Relationship type:	protein modification catalytic chemical reaction protein-protein interaction compound-protein interaction TF-target gene regulation small RNA-target regulation co-expressed gene pair carrier and transported molecule family/complex and member
Relationship evidence:	Solid line: validated Dashed line: predicted
Relationship direction:	Arrow: positive T shape: negative None arrow: unknown or n/a
Hormone association:	Thicker line: hormone related relationship : hormone related Node
Node type:	Transcription factor or transcriptional regulator Compound Kinase Small regulatory RNA (miRNA & ta-siRNA) Other nodes

No.	Path
2	AT5G07940 -- has similar expression pattern (mutual information value=0.815374) with -- AT3G09670
3	AT5G07940 -- has similar expression pattern (mutual information value=1.00316) with -- ATSMC1; SMC1; TTN8
4	AT5G07940 -- has similar expression pattern (mutual information value=0.815374) with -- AT3G09670 -- has similar expression pattern (mutual information value=0.815374) with -- AT5G07980
5	AT5G07940 -- has similar expression pattern (mutual information value=1.00316) with -- ATSMC1; SMC1; TTN8 -- has similar expression pattern (mutual information value=0.904758) with -- SNL1
6	AT5G07940 -- has similar expression pattern (mutual information value=1.00316) with -- ATSMC1; SMC1; TTN8 -- has similar expression pattern (mutual information value=0.90155) with -- AtUBP13; UBP13

	Funding by the National Science Foundation	Funding by the Oklahoma Center for the Advancement of Science & Technology	Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab Disclaimer \| Contact