Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node SPCH
Type: Protein GRN ID: np36417 Name: SPCH
Annotation: SPCH | basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Gene Locus: AT5G53210
Transcription factor /
transcriptional regulator:		 transcription factor family bHLH
Gene Expression (Affy ATH1 probeset): 248247_at    
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 SPCH  --  interacts with  --  ICE2; SCRM2
3 SPCH  --  interacts with  --  ATICE1; ICE1; SCRM
4 SPCH  --  has similar expression pattern (mutual information value=0.891825) with  --  EPF2
5 SPCH  --  has similar expression pattern (mutual information value=0.865609) with  --  AtRLP17; TMM
6 SPCH  --  has similar expression pattern (mutual information value=0.806397) with  --  ATSBT1.3; SBT1.3
7 SPCH  --  interacts with  --  ICE2; SCRM2  --  interacts with  --  JAZ9
8 SPCH  --  interacts with  --  ICE2; SCRM2  --  interacts with  --  JAZ4
9 SPCH  --  interacts with  --  ICE2; SCRM2  --  interacts with  --  JAZ1
10 SPCH  --  interacts with  --  ICE2; SCRM2  --  interacts with  --  AT3G27050
11 SPCH  --  interacts with  --  ICE2; SCRM2  --  interacts with  --  FMA
12 SPCH  --  interacts with  --  ICE2; SCRM2  --  interacts with  --  MUTE
13 SPCH  --  interacts with  --  ICE2; SCRM2  --  has similar expression pattern (mutual information value=0.822695) with  --  AT1G11430
14 SPCH  --  interacts with  --  ICE2; SCRM2  --  has similar expression pattern (mutual information value=0.876012) with  --  AT1G78180
15 SPCH  --  interacts with  --  ICE2; SCRM2  --  has similar expression pattern (mutual information value=0.860267) with  --  AT3G05180
16 SPCH  --  interacts with  --  ICE2; SCRM2  --  has similar expression pattern (mutual information value=0.828864) with  --  AT4G26370
17 SPCH  --  interacts with  --  ATICE1; ICE1; SCRM  --  interacts with  --  RGE1; ZOU
18 SPCH  --  interacts with  --  ATICE1; ICE1; SCRM  --  interacts with  --  SNRK2-3
19 SPCH  --  interacts with  --  ATICE1; ICE1; SCRM  --  interacts with  --  JAZ11
20 SPCH  --  interacts with  --  ATICE1; ICE1; SCRM  --  interacts with  --  JAI3
21 SPCH  --  interacts with  --  ATICE1; ICE1; SCRM  --  interacts with  --  CBFS
22 SPCH  --  interacts with  --  ATICE1; ICE1; SCRM  --  interacts with  --  ATMYB15; ATY19; MYB15
23 SPCH  --  interacts with  --  ATICE1; ICE1; SCRM  --  interacts with  --  HHP1
24 SPCH  --  interacts with  --  ATICE1; ICE1; SCRM  --  regulates the expression of   --  CBF3
25 SPCH  --  has similar expression pattern (mutual information value=0.806397) with  --  ATSBT1.3; SBT1.3  --  has similar expression pattern (mutual information value=0.827862) with  --  PDF1
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact