Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT4G28020
Type: Protein GRN ID: np31602 Name:
Annotation: unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0066 (InterPro:IPR001378); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Gene Locus: AT4G28020
Gene Expression (Affy ATH1 probeset): 253848_at    
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT4G28020  --  interacts with  --  AT3G01435
3 AT4G28020  --  interacts with  --  AT1G17090
4 AT4G28020  --  interacts with  --  LQY1
5 AT4G28020  --  interacts with  --  AT3G01435  --  interacts with  --  AT5G25080
6 AT4G28020  --  interacts with  --  AT3G01435  --  interacts with  --  AT4G24840
7 AT4G28020  --  interacts with  --  AT3G01435  --  interacts with  --  AtRHD6; RHD6
8 AT4G28020  --  interacts with  --  AT3G01435  --  interacts with  --  AT2G30880
9 AT4G28020  --  interacts with  --  AT3G01435  --  interacts with  --  CYCA2;3
10 AT4G28020  --  interacts with  --  AT3G01435  --  interacts with  --  AT1G03040
11 AT4G28020  --  interacts with  --  LQY1  --  interacts with  --  AT1G67700
12 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.37997) with  --  PSBW
13 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.41869) with  --  CRR3
14 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.15999) with  --  AT2G29310
15 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.41258) with  --  PSBX
16 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.48085) with  --  ZKT
17 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.9253) with  --  TLP18.3
18 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.29095) with  --  AT2G03750
19 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.52342) with  --  CRB; CSP41B; HIP1.3
20 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.58115) with  --  AT2G05310
21 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.58115) with  --  AT4G13500
22 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.40404) with  --  AT1G54500
23 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.40644) with  --  OE23; OEE2; PSBP-1; PSII-P
24 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.63814) with  --  AT1G74730
25 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=0.892391) with  --  AT1G56145
26 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.53165) with  --  NDF1; NDH48
27 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.2815) with  --  ATCDSP32; CDSP32
28 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.06541) with  --  AT1G49750
29 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.41101) with  --  AT1G14345
30 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.48076) with  --  AT1G75460
31 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.6357) with  --  AT1G21500
32 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.53212) with  --  AT1G76450
33 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.35427) with  --  AT1G52220
34 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.41212) with  --  ATFD2; FED A
35 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.57612) with  --  TAPX
36 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.24482) with  --  NDF5
37 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.43768) with  --  ATCYP38; CYP38
38 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.28764) with  --  ATPPT2; PPT2
39 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.61117) with  --  AT3G10060
40 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.67024) with  --  ATF1; TRXF1
41 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.38185) with  --  ATHM4; ATM4; TRX-M4
42 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.75507) with  --  PSAH-1
43 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.95692) with  --  PSBTN
44 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.29492) with  --  AT1G20810
45 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.35113) with  --  AT1G18060
46 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.47918) with  --  LHCA2*1; LHCA6
47 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.44328) with  --  DRT112; PETE2
48 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.40248) with  --  PRK
49 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.67832) with  --  AT4G02530
50 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.09295) with  --  AOP2
51 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.57345) with  --  PETC; PGR1
52 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.46749) with  --  APX4; TL29
53 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.80727) with  --  PSBQ; PSBQ-1; PSBQA
54 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.71413) with  --  AT4G27700
55 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.50448) with  --  PSAE-1
56 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.37727) with  --  SHM1; SHMT1; STM
57 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.40295) with  --  FBA2
58 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.52494) with  --  AT3G50685
59 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.64722) with  --  OEC33; PSBO-2; PSBO2
60 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.67647) with  --  HCEF1
61 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.63134) with  --  PPL1
62 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.53497) with  --  AT3G56650
63 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.27901) with  --  OHP; PDE335
64 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.49891) with  --  AT5G07020
65 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.16914) with  --  ATMYB29; MYB29; PMG2
66 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.57201) with  --  HCF136
67 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.47334) with  --  ATPGLP1; PGLP1
68 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.47334) with  --  AT5G36790
69 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.29086) with  --  AT5G37360
70 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.51637) with  --  AT5G38520
71 AT4G28020  --  interacts with  --  LQY1  --  has similar expression pattern (mutual information value=1.63761) with  --  AT5G52970
72 AT4G28020  --  interacts with  --  LQY1  --  is the target gene of  --  ath-miR5995b
73 AT4G28020  --  interacts with  --  LQY1  --  is the target gene of  --  ath-miR5595a
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact