Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT4G01780
Type: Protein GRN ID: np31517 Name:
Annotation: XH/XS domain-containing protein
Gene Locus: AT4G01780
Gene Expression (Affy ATH1 probeset): 255566_s_at    
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT4G01780  --  has similar expression pattern (mutual information value=0.848822) with  --  AT1G63470
3 AT4G01780  --  has similar expression pattern (mutual information value=0.812354) with  --  AT4G22000
4 AT4G01780  --  has similar expression pattern (mutual information value=0.848822) with  --  AT1G63470  --  interacts with  --  AT4G25320
5 AT4G01780  --  has similar expression pattern (mutual information value=0.848822) with  --  AT1G63470  --  interacts with  --  AT4G17950
6 AT4G01780  --  has similar expression pattern (mutual information value=0.848822) with  --  AT1G63470  --  interacts with  --  ATHSP23.6-MITO; HSP23.6-MITO
7 AT4G01780  --  has similar expression pattern (mutual information value=0.848822) with  --  AT1G63470  --  has similar expression pattern (mutual information value=0.838189) with  --  AT2G13690
8 AT4G01780  --  has similar expression pattern (mutual information value=0.848822) with  --  AT1G63470  --  has similar expression pattern (mutual information value=0.848822) with  --  IDN2; RDM12
9 AT4G01780  --  has similar expression pattern (mutual information value=0.812354) with  --  AT4G22000  --  has similar expression pattern (mutual information value=0.83508) with  --  AT2G27730
10 AT4G01780  --  has similar expression pattern (mutual information value=0.812354) with  --  AT4G22000  --  has similar expression pattern (mutual information value=1.00968) with  --  AT2G18520
11 AT4G01780  --  has similar expression pattern (mutual information value=0.812354) with  --  AT4G22000  --  has similar expression pattern (mutual information value=0.973767) with  --  AT1G60770
12 AT4G01780  --  has similar expression pattern (mutual information value=0.812354) with  --  AT4G22000  --  has similar expression pattern (mutual information value=1.27373) with  --  AT1G09590
13 AT4G01780  --  has similar expression pattern (mutual information value=0.812354) with  --  AT4G22000  --  has similar expression pattern (mutual information value=1.27373) with  --  AT1G09690
14 AT4G01780  --  has similar expression pattern (mutual information value=0.812354) with  --  AT4G22000  --  has similar expression pattern (mutual information value=0.998322) with  --  AT2G31725
15 AT4G01780  --  has similar expression pattern (mutual information value=0.812354) with  --  AT4G22000  --  has similar expression pattern (mutual information value=0.824736) with  --  AHP2
16 AT4G01780  --  has similar expression pattern (mutual information value=0.812354) with  --  AT4G22000  --  has similar expression pattern (mutual information value=1.11147) with  --  AT3G10090
17 AT4G01780  --  has similar expression pattern (mutual information value=0.812354) with  --  AT4G22000  --  has similar expression pattern (mutual information value=0.883809) with  --  AT3G13845
18 AT4G01780  --  has similar expression pattern (mutual information value=0.812354) with  --  AT4G22000  --  has similar expression pattern (mutual information value=0.973459) with  --  AT3G08520
19 AT4G01780  --  has similar expression pattern (mutual information value=0.812354) with  --  AT4G22000  --  has similar expression pattern (mutual information value=0.973459) with  --  AT2G40205
20 AT4G01780  --  has similar expression pattern (mutual information value=0.812354) with  --  AT4G22000  --  has similar expression pattern (mutual information value=0.973459) with  --  AT3G56020
21 AT4G01780  --  has similar expression pattern (mutual information value=0.812354) with  --  AT4G22000  --  has similar expression pattern (mutual information value=0.973459) with  --  AT3G11120
22 AT4G01780  --  has similar expression pattern (mutual information value=0.812354) with  --  AT4G22000  --  has similar expression pattern (mutual information value=1.07044) with  --  rps15ae
23 AT4G01780  --  has similar expression pattern (mutual information value=0.812354) with  --  AT4G22000  --  has similar expression pattern (mutual information value=1.15741) with  --  AT3G59650
24 AT4G01780  --  has similar expression pattern (mutual information value=0.812354) with  --  AT4G22000  --  has similar expression pattern (mutual information value=0.978531) with  --  AT5G05210
25 AT4G01780  --  has similar expression pattern (mutual information value=0.812354) with  --  AT4G22000  --  has similar expression pattern (mutual information value=1.11678) with  --  NACA3
26 AT4G01780  --  has similar expression pattern (mutual information value=0.812354) with  --  AT4G22000  --  has similar expression pattern (mutual information value=0.858433) with  --  RPT4A
27 AT4G01780  --  has similar expression pattern (mutual information value=0.812354) with  --  AT4G22000  --  has similar expression pattern (mutual information value=0.993837) with  --  ATCBP20
28 AT4G01780  --  has similar expression pattern (mutual information value=0.812354) with  --  AT4G22000  --  has similar expression pattern (mutual information value=0.991409) with  --  SAD1
29 AT4G01780  --  has similar expression pattern (mutual information value=0.812354) with  --  AT4G22000  --  has similar expression pattern (mutual information value=1.0424) with  --  AT5G57120
30 AT4G01780  --  has similar expression pattern (mutual information value=0.812354) with  --  AT4G22000  --  has similar expression pattern (mutual information value=0.894665) with  --  AT5G15610
31 AT4G01780  --  has similar expression pattern (mutual information value=0.812354) with  --  AT4G22000  --  has similar expression pattern (mutual information value=0.914168) with  --  AT5G16950
32 AT4G01780  --  has similar expression pattern (mutual information value=0.812354) with  --  AT4G22000  --  has similar expression pattern (mutual information value=0.883687) with  --  AT5G20000
33 AT4G01780  --  has similar expression pattern (mutual information value=0.812354) with  --  AT4G22000  --  has similar expression pattern (mutual information value=0.9835) with  --  AT2G41650
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact