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Location:  Home > Details for node RGF6
Type: Protein GRN ID: np30871 Name: RGF6
Annotation: RGF6 | Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).
Gene Locus: AT4G16515
Gene Expression (Affy ATH1 probeset): 245336_at    
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Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 RGF6  --  has similar expression pattern (mutual information value=0.814863) with  --  AT2G10940
3 RGF6  --  has similar expression pattern (mutual information value=0.835835) with  --  BEE1
4 RGF6  --  has similar expression pattern (mutual information value=0.823626) with  --  AT4G34770
5 RGF6  --  has similar expression pattern (mutual information value=0.980699) with  --  AT5G18060
6 RGF6  --  has similar expression pattern (mutual information value=0.858292) with  --  AT5G50335
7 RGF6  --  has similar expression pattern (mutual information value=0.814863) with  --  AT2G10940  --  has similar expression pattern (mutual information value=0.897605) with  --  PIP2;6; PIP2E
8 RGF6  --  has similar expression pattern (mutual information value=0.814863) with  --  AT2G10940  --  has similar expression pattern (mutual information value=0.821926) with  --  AT2G42320
9 RGF6  --  has similar expression pattern (mutual information value=0.814863) with  --  AT2G10940  --  has similar expression pattern (mutual information value=1.05039) with  --  AT1G09750
10 RGF6  --  has similar expression pattern (mutual information value=0.814863) with  --  AT2G10940  --  has similar expression pattern (mutual information value=1.11608) with  --  AT1G55260
11 RGF6  --  has similar expression pattern (mutual information value=0.814863) with  --  AT2G10940  --  has similar expression pattern (mutual information value=0.832661) with  --  AT3G28040
12 RGF6  --  has similar expression pattern (mutual information value=0.814863) with  --  AT2G10940  --  has similar expression pattern (mutual information value=0.811895) with  --  AT3G54400
13 RGF6  --  has similar expression pattern (mutual information value=0.814863) with  --  AT2G10940  --  has similar expression pattern (mutual information value=0.827803) with  --  BETA CA2; CA18; CA2
14 RGF6  --  has similar expression pattern (mutual information value=0.814863) with  --  AT2G10940  --  has similar expression pattern (mutual information value=0.990445) with  --  AT4G16980
15 RGF6  --  has similar expression pattern (mutual information value=0.835835) with  --  BEE1  --  interacts with  --  KAN; KAN1
16 RGF6  --  has similar expression pattern (mutual information value=0.835835) with  --  BEE1  --  interacts with  --  CES/CESTA
17 RGF6  --  has similar expression pattern (mutual information value=0.835835) with  --  BEE1  --  has similar expression pattern (mutual information value=0.810638) with  --  AST91; SULTR3;3
18 RGF6  --  has similar expression pattern (mutual information value=0.835835) with  --  BEE1  --  has similar expression pattern (mutual information value=0.980843) with  --  BEE3
19 RGF6  --  has similar expression pattern (mutual information value=0.835835) with  --  BEE1  --  is a member of  --  BEE1 family9, transcription factor gene
20 RGF6  --  has similar expression pattern (mutual information value=0.980699) with  --  AT5G18060  --  has similar expression pattern (mutual information value=0.849738) with  --  AT1G29430
21 RGF6  --  has similar expression pattern (mutual information value=0.980699) with  --  AT5G18060  --  has similar expression pattern (mutual information value=0.849738) with  --  AT5G27780
22 RGF6  --  has similar expression pattern (mutual information value=0.980699) with  --  AT5G18060  --  has similar expression pattern (mutual information value=0.908611) with  --  AT1G29450
23 RGF6  --  has similar expression pattern (mutual information value=0.980699) with  --  AT5G18060  --  has similar expression pattern (mutual information value=0.917767) with  --  SAUR68
24 RGF6  --  has similar expression pattern (mutual information value=0.980699) with  --  AT5G18060  --  has similar expression pattern (mutual information value=0.895614) with  --  AT1G29440
25 RGF6  --  has similar expression pattern (mutual information value=0.858292) with  --  AT5G50335  --  interacts with  --  AT3G54390
26 RGF6  --  has similar expression pattern (mutual information value=0.858292) with  --  AT5G50335  --  interacts with  --  ASIL1
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