Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT1G29450
Type: Protein GRN ID: np11763 Name:
Annotation: SAUR-like auxin-responsive protein family
Gene Locus: AT1G29450
Gene Expression (Affy ATH1 probeset): 259784_at    
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT1G29450  --  has similar expression pattern (mutual information value=0.826991) with  --  AT2G18300
3 AT1G29450  --  has similar expression pattern (mutual information value=1.23653) with  --  AT5G27780
4 AT1G29450  --  has similar expression pattern (mutual information value=1.14679) with  --  SAUR68
5 AT1G29450  --  has similar expression pattern (mutual information value=0.906304) with  --  AT4G38860
6 AT1G29450  --  has similar expression pattern (mutual information value=0.908611) with  --  AT5G18060
7 AT1G29450  --  has similar expression pattern (mutual information value=0.826991) with  --  AT2G18300  --  interacts with  --  ARF6
8 AT1G29450  --  has similar expression pattern (mutual information value=0.826991) with  --  AT2G18300  --  interacts with  --  HLH1; PAR1
9 AT1G29450  --  has similar expression pattern (mutual information value=0.826991) with  --  AT2G18300  --  interacts with  --  IBH1
10 AT1G29450  --  has similar expression pattern (mutual information value=0.826991) with  --  AT2G18300  --  has similar expression pattern (mutual information value=0.905776) with  --  AT2G15580
11 AT1G29450  --  has similar expression pattern (mutual information value=0.826991) with  --  AT2G18300  --  has similar expression pattern (mutual information value=0.825096) with  --  MLP43
12 AT1G29450  --  has similar expression pattern (mutual information value=0.826991) with  --  AT2G18300  --  has similar expression pattern (mutual information value=0.881012) with  --  AT1G52190
13 AT1G29450  --  has similar expression pattern (mutual information value=0.826991) with  --  AT2G18300  --  has similar expression pattern (mutual information value=0.862797) with  --  AT1G29670
14 AT1G29450  --  has similar expression pattern (mutual information value=0.826991) with  --  AT2G18300  --  has similar expression pattern (mutual information value=0.835117) with  --  AT1G18620
15 AT1G29450  --  has similar expression pattern (mutual information value=0.826991) with  --  AT2G18300  --  has similar expression pattern (mutual information value=0.851723) with  --  AtGPAT8; GPAT8
16 AT1G29450  --  has similar expression pattern (mutual information value=0.826991) with  --  AT2G18300  --  has similar expression pattern (mutual information value=0.813635) with  --  AT4G00780
17 AT1G29450  --  has similar expression pattern (mutual information value=0.826991) with  --  AT2G18300  --  has similar expression pattern (mutual information value=0.851155) with  --  JK224; NPH1; PHOT1; RPT1
18 AT1G29450  --  has similar expression pattern (mutual information value=0.826991) with  --  AT2G18300  --  has similar expression pattern (mutual information value=0.818826) with  --  ATMIXTA; ATMYB16; MYB16
19 AT1G29450  --  has similar expression pattern (mutual information value=0.826991) with  --  AT2G18300  --  has similar expression pattern (mutual information value=0.873398) with  --  AT5G18600
20 AT1G29450  --  has similar expression pattern (mutual information value=0.826991) with  --  AT2G18300  --  has similar expression pattern (mutual information value=1.0062) with  --  AT5G44680
21 AT1G29450  --  has similar expression pattern (mutual information value=0.826991) with  --  AT2G18300  --  has similar expression pattern (mutual information value=0.834194) with  --  P1R1
22 AT1G29450  --  has similar expression pattern (mutual information value=1.23653) with  --  AT5G27780  --  has similar expression pattern (mutual information value=1.00026) with  --  TBL45
23 AT1G29450  --  has similar expression pattern (mutual information value=1.23653) with  --  AT5G27780  --  has similar expression pattern (mutual information value=0.840316) with  --  AT2G42320
24 AT1G29450  --  has similar expression pattern (mutual information value=1.23653) with  --  AT5G27780  --  has similar expression pattern (mutual information value=0.81727) with  --  AT1G68780
25 AT1G29450  --  has similar expression pattern (mutual information value=1.23653) with  --  AT5G27780  --  has similar expression pattern (mutual information value=1.24032) with  --  AT1G29440
26 AT1G29450  --  has similar expression pattern (mutual information value=1.23653) with  --  AT5G27780  --  has similar expression pattern (mutual information value=0.91199) with  --  AT4G38840
27 AT1G29450  --  has similar expression pattern (mutual information value=1.23653) with  --  AT5G27780  --  has similar expression pattern (mutual information value=0.906295) with  --  ATSAUR15; SAUR-AC1; SAUR15; SAUR_AC1
28 AT1G29450  --  has similar expression pattern (mutual information value=1.23653) with  --  AT5G27780  --  has similar expression pattern (mutual information value=0.919428) with  --  AT5G03120
29 AT1G29450  --  has similar expression pattern (mutual information value=1.14679) with  --  SAUR68  --  has similar expression pattern (mutual information value=0.824005) with  --  MLP28
30 AT1G29450  --  has similar expression pattern (mutual information value=1.14679) with  --  SAUR68  --  has similar expression pattern (mutual information value=0.829648) with  --  PKS2
31 AT1G29450  --  has similar expression pattern (mutual information value=1.14679) with  --  SAUR68  --  has similar expression pattern (mutual information value=1.40591) with  --  AT1G29500
32 AT1G29450  --  has similar expression pattern (mutual information value=1.14679) with  --  SAUR68  --  has similar expression pattern (mutual information value=1.02577) with  --  AT3G03840
33 AT1G29450  --  has similar expression pattern (mutual information value=0.908611) with  --  AT5G18060  --  has similar expression pattern (mutual information value=0.980699) with  --  RGF6
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact