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A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT3G56820
Type: Protein GRN ID: np27147 Name:
Annotation: unknown protein; Has 34 Blast hits to 34 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Gene Locus: AT3G56820
Gene Expression (Affy ATH1 probeset): 246291_at    
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 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
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Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT3G56820  --  interacts with  --  AT5G03200
3 AT3G56820  --  has similar expression pattern (mutual information value=0.816546) with  --  ARPC5; CRK
4 AT3G56820  --  interacts with  --  AT5G03200  --  interacts with  --  MED32
5 AT3G56820  --  interacts with  --  AT5G03200  --  interacts with  --  AT5G55330
6 AT3G56820  --  interacts with  --  AT5G03200  --  interacts with  --  AHP2
7 AT3G56820  --  interacts with  --  AT5G03200  --  interacts with  --  PIP2;2; PIP2B
8 AT3G56820  --  interacts with  --  AT5G03200  --  interacts with  --  AtGDU6; GDU6
9 AT3G56820  --  interacts with  --  AT5G03200  --  interacts with  --  ATGDU2; GDU2
10 AT3G56820  --  interacts with  --  AT5G03200  --  interacts with  --  AtGDU5; GDU5
11 AT3G56820  --  interacts with  --  AT5G03200  --  interacts with  --  AtGDU4; GDU4
12 AT3G56820  --  interacts with  --  AT5G03200  --  interacts with  --  ATGDU3; GDU3; LSB1
13 AT3G56820  --  interacts with  --  AT5G03200  --  interacts with  --  GDU1
14 AT3G56820  --  has similar expression pattern (mutual information value=0.816546) with  --  ARPC5; CRK  --  has similar expression pattern (mutual information value=0.900691) with  --  AT3G17365
15 AT3G56820  --  has similar expression pattern (mutual information value=0.816546) with  --  ARPC5; CRK  --  has similar expression pattern (mutual information value=0.876857) with  --  ATRPB15.9; NRPB4; RPB15.9; RPB15.9.9
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