Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT3G48860
Type: Protein GRN ID: np26087 Name:
Annotation: unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23700.1); Has 12429 Blast hits to 9751 proteins in 897 species: Archae - 180; Bacteria - 1190; Metazoa - 6552; Fungi - 1361; Plants - 886; Viruses - 50; Other Eukaryotes - 2210 (source: NCBI BLink). [TCDB:9.B.24.2] [TCDB:9.B.24.3] [TCDB:9.B.25.1]
Gene Locus: AT3G48860
Gene Expression (Affy ATH1 probeset): 252335_at    
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT3G48860  --  has similar expression pattern (mutual information value=0.858397) with  --  AT1G34300
3 AT3G48860  --  has similar expression pattern (mutual information value=0.867153) with  --  SAMC1; SAMT1
4 AT3G48860  --  has similar expression pattern (mutual information value=0.858397) with  --  AT1G34300  --  has similar expression pattern (mutual information value=0.81833) with  --  AT2G31670
5 AT3G48860  --  has similar expression pattern (mutual information value=0.858397) with  --  AT1G34300  --  has similar expression pattern (mutual information value=0.800759) with  --  WRKY4
6 AT3G48860  --  has similar expression pattern (mutual information value=0.858397) with  --  AT1G34300  --  has similar expression pattern (mutual information value=0.821922) with  --  ATYLMG1-1; emb1990; YLMG1-1
7 AT3G48860  --  has similar expression pattern (mutual information value=0.858397) with  --  AT1G34300  --  has similar expression pattern (mutual information value=0.878722) with  --  ATSYP81; ATUFE1; SYP81; UFE1
8 AT3G48860  --  has similar expression pattern (mutual information value=0.858397) with  --  AT1G34300  --  has similar expression pattern (mutual information value=0.803725) with  --  ARI1; ATARI1
9 AT3G48860  --  has similar expression pattern (mutual information value=0.858397) with  --  AT1G34300  --  has similar expression pattern (mutual information value=0.860703) with  --  AT3G52960
10 AT3G48860  --  has similar expression pattern (mutual information value=0.858397) with  --  AT1G34300  --  transport  --  Zinc cation
11 AT3G48860  --  has similar expression pattern (mutual information value=0.867153) with  --  SAMC1; SAMT1  --  has similar expression pattern (mutual information value=1.32898) with  --  AT2G37660
12 AT3G48860  --  has similar expression pattern (mutual information value=0.867153) with  --  SAMC1; SAMT1  --  has similar expression pattern (mutual information value=1.18116) with  --  CJD1
13 AT3G48860  --  has similar expression pattern (mutual information value=0.867153) with  --  SAMC1; SAMT1  --  has similar expression pattern (mutual information value=1.20682) with  --  CLPP6; NCLPP1; NCLPP6
14 AT3G48860  --  has similar expression pattern (mutual information value=0.867153) with  --  SAMC1; SAMT1  --  has similar expression pattern (mutual information value=1.30818) with  --  PRPL11
15 AT3G48860  --  has similar expression pattern (mutual information value=0.867153) with  --  SAMC1; SAMT1  --  has similar expression pattern (mutual information value=1.28612) with  --  AT3G08740
16 AT3G48860  --  has similar expression pattern (mutual information value=0.867153) with  --  SAMC1; SAMT1  --  has similar expression pattern (mutual information value=1.29331) with  --  AT3G13120
17 AT3G48860  --  has similar expression pattern (mutual information value=0.867153) with  --  SAMC1; SAMT1  --  has similar expression pattern (mutual information value=0.813645) with  --  PDLP3
18 AT3G48860  --  has similar expression pattern (mutual information value=0.867153) with  --  SAMC1; SAMT1  --  has similar expression pattern (mutual information value=1.02132) with  --  AGD2
19 AT3G48860  --  has similar expression pattern (mutual information value=0.867153) with  --  SAMC1; SAMT1  --  has similar expression pattern (mutual information value=1.29747) with  --  AT3G52150
20 AT3G48860  --  has similar expression pattern (mutual information value=0.867153) with  --  SAMC1; SAMT1  --  has similar expression pattern (mutual information value=0.883566) with  --  AT3G56160
21 AT3G48860  --  has similar expression pattern (mutual information value=0.867153) with  --  SAMC1; SAMT1  --  has similar expression pattern (mutual information value=1.21721) with  --  EMB3126
22 AT3G48860  --  has similar expression pattern (mutual information value=0.867153) with  --  SAMC1; SAMT1  --  has similar expression pattern (mutual information value=1.19785) with  --  CLPP4; NCLPP4
23 AT3G48860  --  has similar expression pattern (mutual information value=0.867153) with  --  SAMC1; SAMT1  --  has similar expression pattern (mutual information value=1.25981) with  --  AT5G47190
24 AT3G48860  --  has similar expression pattern (mutual information value=0.867153) with  --  SAMC1; SAMT1  --  has similar expression pattern (mutual information value=1.07374) with  --  AT5G66530
25 AT3G48860  --  has similar expression pattern (mutual information value=0.867153) with  --  SAMC1; SAMT1  --  has similar expression pattern (mutual information value=1.22599) with  --  RPL9
26 AT3G48860  --  has similar expression pattern (mutual information value=0.867153) with  --  SAMC1; SAMT1  --  has similar expression pattern (mutual information value=1.23637) with  --  PHR2
27 AT3G48860  --  has similar expression pattern (mutual information value=0.867153) with  --  SAMC1; SAMT1  --  transport  --  Sugar phosphate
28 AT3G48860  --  has similar expression pattern (mutual information value=0.867153) with  --  SAMC1; SAMT1  --  transport  --  Aromatic acid
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact