Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT3G43170
Type: Protein GRN ID: np25513 Name:
Annotation: unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT5G54330.1); Has 90 Blast hits to 90 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Gene Locus: AT3G43170
Gene Expression (Affy ATH1 probeset): 252735_at    
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT3G43170  --  has similar expression pattern (mutual information value=0.815531) with  --  AT2G10740
3 AT3G43170  --  has similar expression pattern (mutual information value=0.815531) with  --  AT2G10740  --  has similar expression pattern (mutual information value=1.04975) with  --  AT2G06820
4 AT3G43170  --  has similar expression pattern (mutual information value=0.815531) with  --  AT2G10740  --  has similar expression pattern (mutual information value=0.80681) with  --  ATCKX2
5 AT3G43170  --  has similar expression pattern (mutual information value=0.815531) with  --  AT2G10740  --  has similar expression pattern (mutual information value=0.903861) with  --  AT2G01240
6 AT3G43170  --  has similar expression pattern (mutual information value=0.815531) with  --  AT2G10740  --  has similar expression pattern (mutual information value=1.01849) with  --  AT1G42650
7 AT3G43170  --  has similar expression pattern (mutual information value=0.815531) with  --  AT2G10740  --  has similar expression pattern (mutual information value=0.815774) with  --  ATTPS4; TPS4
8 AT3G43170  --  has similar expression pattern (mutual information value=0.815531) with  --  AT2G10740  --  has similar expression pattern (mutual information value=0.903467) with  --  AT3G42140
9 AT3G43170  --  has similar expression pattern (mutual information value=0.815531) with  --  AT2G10740  --  has similar expression pattern (mutual information value=0.802429) with  --  AT3G44070
10 AT3G43170  --  has similar expression pattern (mutual information value=0.815531) with  --  AT2G10740  --  has similar expression pattern (mutual information value=0.854297) with  --  HDG9
11 AT3G43170  --  has similar expression pattern (mutual information value=0.815531) with  --  AT2G10740  --  has similar expression pattern (mutual information value=0.872591) with  --  AT5G40050
12 AT3G43170  --  has similar expression pattern (mutual information value=0.815531) with  --  AT2G10740  --  has similar expression pattern (mutual information value=1.07341) with  --  AT5G43800
13 AT3G43170  --  has similar expression pattern (mutual information value=0.815531) with  --  AT2G10740  --  has similar expression pattern (mutual information value=1.15169) with  --  AT5G54220
14 AT3G43170  --  has similar expression pattern (mutual information value=0.815531) with  --  AT2G10740  --  has similar expression pattern (mutual information value=0.860184) with  --  AT5G59170
15 AT3G43170  --  has similar expression pattern (mutual information value=0.815531) with  --  AT2G10740  --  has similar expression pattern (mutual information value=0.875521) with  --  ASD2; ATASD2
16 AT3G43170  --  has similar expression pattern (mutual information value=0.815531) with  --  AT2G10740  --  has similar expression pattern (mutual information value=0.9108) with  --  AT5G27510
17 AT3G43170  --  has similar expression pattern (mutual information value=0.815531) with  --  AT2G10740  --  has similar expression pattern (mutual information value=0.846088) with  --  AT5G20760
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact