Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT3G11460
Type: Protein GRN ID: np25363 Name:
Annotation: Pentatricopeptide repeat (PPR) superfamily protein
Gene Locus: AT3G11460
Gene Expression (Affy ATH1 probeset): 259285_at    
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT3G11460  --  interacts with  --  ICR1; RIP1
3 AT3G11460  --  interacts with  --  ICR1; RIP1  --  interacts with  --  VAR3
4 AT3G11460  --  interacts with  --  ICR1; RIP1  --  interacts with  --  SEC3A
5 AT3G11460  --  interacts with  --  ICR1; RIP1  --  interacts with  --  ARAC11; ATRAC11; ATROP1; ROP1; ROP1AT
6 AT3G11460  --  interacts with  --  ICR1; RIP1  --  interacts with  --  AT4G24840
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact