Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT2G30680
Type: Protein GRN ID: np18920 Name:
Annotation: BEST Arabidopsis thaliana protein match is: glucan synthase-like 3 (TAIR:AT2G31960.2); Has 80 Blast hits to 80 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Gene Locus: AT2G30680
Gene Expression (Affy ATH1 probeset): 267574_at    
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT2G30680  --  has similar expression pattern (mutual information value=0.821673) with  --  AT2G21930
3 AT2G30680  --  has similar expression pattern (mutual information value=0.821673) with  --  AT2G21930  --  has similar expression pattern (mutual information value=0.844006) with  --  AT1G47660
4 AT2G30680  --  has similar expression pattern (mutual information value=0.821673) with  --  AT2G21930  --  has similar expression pattern (mutual information value=0.813786) with  --  AT1G27860
5 AT2G30680  --  has similar expression pattern (mutual information value=0.821673) with  --  AT2G21930  --  has similar expression pattern (mutual information value=0.813786) with  --  AT1G28500
6 AT2G30680  --  has similar expression pattern (mutual information value=0.821673) with  --  AT2G21930  --  has similar expression pattern (mutual information value=0.91152) with  --  AT4G29200
7 AT2G30680  --  has similar expression pattern (mutual information value=0.821673) with  --  AT2G21930  --  has similar expression pattern (mutual information value=0.858146) with  --  AT4G39753
8 AT2G30680  --  has similar expression pattern (mutual information value=0.821673) with  --  AT2G21930  --  has similar expression pattern (mutual information value=0.833622) with  --  AT5G47260
9 AT2G30680  --  has similar expression pattern (mutual information value=0.821673) with  --  AT2G21930  --  has similar expression pattern (mutual information value=0.942647) with  --  AT5G25290
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact