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A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT1G53460
Type: Protein GRN ID: np11716 Name:
Annotation: BEST Arabidopsis thaliana protein match is: Ran BP2/NZF zinc finger-like superfamily protein (TAIR:AT1G70650.2); Has 485 Blast hits to 413 proteins in 88 species: Archae - 11; Bacteria - 27; Metazoa - 119; Fungi - 17; Plants - 101; Viruses - 2; Other Eukaryotes - 208 (source: NCBI BLink).
Gene Locus: AT1G53460
Gene Expression (Affy ATH1 probeset): 260981_at    
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 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
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 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
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Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT1G53460  --  has similar expression pattern (mutual information value=0.942928) with  --  AT1G11240
3 AT1G53460  --  has similar expression pattern (mutual information value=0.942928) with  --  AT1G11240  --  interacts with  --  AHL29; SOB3
4 AT1G53460  --  has similar expression pattern (mutual information value=0.942928) with  --  AT1G11240  --  has similar expression pattern (mutual information value=0.985103) with  --  AT2G47790
5 AT1G53460  --  has similar expression pattern (mutual information value=0.942928) with  --  AT1G11240  --  has similar expression pattern (mutual information value=0.851596) with  --  AT1G79200
6 AT1G53460  --  has similar expression pattern (mutual information value=0.942928) with  --  AT1G11240  --  has similar expression pattern (mutual information value=0.846398) with  --  AT2G21290
7 AT1G53460  --  has similar expression pattern (mutual information value=0.942928) with  --  AT1G11240  --  has similar expression pattern (mutual information value=0.834332) with  --  AT1G54440
8 AT1G53460  --  has similar expression pattern (mutual information value=0.942928) with  --  AT1G11240  --  has similar expression pattern (mutual information value=0.976472) with  --  AT1G12830
9 AT1G53460  --  has similar expression pattern (mutual information value=0.942928) with  --  AT1G11240  --  has similar expression pattern (mutual information value=0.825019) with  --  AT1G02330
10 AT1G53460  --  has similar expression pattern (mutual information value=0.942928) with  --  AT1G11240  --  has similar expression pattern (mutual information value=0.90461) with  --  CDC48C; emb1354
11 AT1G53460  --  has similar expression pattern (mutual information value=0.942928) with  --  AT1G11240  --  has similar expression pattern (mutual information value=1.03625) with  --  AT2G34040
12 AT1G53460  --  has similar expression pattern (mutual information value=0.942928) with  --  AT1G11240  --  has similar expression pattern (mutual information value=0.99207) with  --  AT3G51270
13 AT1G53460  --  has similar expression pattern (mutual information value=0.942928) with  --  AT1G11240  --  has similar expression pattern (mutual information value=0.905075) with  --  AT3G62840
14 AT1G53460  --  has similar expression pattern (mutual information value=0.942928) with  --  AT1G11240  --  has similar expression pattern (mutual information value=0.960064) with  --  AT5G11760
15 AT1G53460  --  has similar expression pattern (mutual information value=0.942928) with  --  AT1G11240  --  has similar expression pattern (mutual information value=0.849018) with  --  NACA3
16 AT1G53460  --  has similar expression pattern (mutual information value=0.942928) with  --  AT1G11240  --  has similar expression pattern (mutual information value=0.960365) with  --  AT5G14440
17 AT1G53460  --  has similar expression pattern (mutual information value=0.942928) with  --  AT1G11240  --  has similar expression pattern (mutual information value=0.996199) with  --  AT5G42060
18 AT1G53460  --  has similar expression pattern (mutual information value=0.942928) with  --  AT1G11240  --  has similar expression pattern (mutual information value=0.930066) with  --  NRPB6A; NRPD6A; NRPE6A
19 AT1G53460  --  has similar expression pattern (mutual information value=0.942928) with  --  AT1G11240  --  has similar expression pattern (mutual information value=0.851656) with  --  AT5G64160
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