Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node SCL3
Type: Protein GRN ID: np06053 Name: SCL3
Annotation: SCL3, SCL-3 | scarecrow-like 3
Gene Locus: AT1G50420
Transcription factor /
transcriptional regulator:		 transcription factor family GRAS
References:
  • Gfeller A, Liechti R, Farmer EE. Arabidopsis jasmonate signaling pathway. Sci Signal. 2010 Feb 16;3(109):cm4. doi: 10.1126/scisignal.3109cm4. Review. PubMed PMID: 20159850.
 
Pathways: Gibberellins;  Brassinosteroids 
Gene Expression (Affy ATH1 probeset): 261866_at    
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 SCL3  --  interacts with  --  JKD
3 SCL3  --  interacts with  --  AT3G45260
4 SCL3  --  interacts with  --  AtIDD5; IDD5
5 SCL3  --  interacts with  --  AtIDD4; IDD4
6 SCL3  --  interacts with  --  MGP
7 SCL3  --  interacts with  --  AtIDD8; IDD8; NUC
8 SCL3  --  interacts with  --  ATISU1; ISU1
9 SCL3  --  interacts with  --  ATARLB1; ATGB1; GB1
10 SCL3  --  interacts with  --  RGA1
11 SCL3  --  interacts with  --  AT1G31240
12 SCL3  --  interacts with  --  AT1G76030
13 SCL3  --  regulates the expression of   --  della family, transcription factor gene
14 SCL3  --  interacts with  --  AT3G45260  --  has similar expression pattern (mutual information value=0.814002) with  --  TCP10
15 SCL3  --  interacts with  --  AT3G45260  --  has similar expression pattern (mutual information value=0.813593) with  --  AT2G20725
16 SCL3  --  interacts with  --  AT3G45260  --  has similar expression pattern (mutual information value=0.802769) with  --  CYP71B4
17 SCL3  --  interacts with  --  AT3G45260  --  has similar expression pattern (mutual information value=0.856882) with  --  AT4G00780
18 SCL3  --  interacts with  --  AT3G45260  --  has similar expression pattern (mutual information value=0.833999) with  --  AT4G01130
19 SCL3  --  interacts with  --  AT3G45260  --  has similar expression pattern (mutual information value=0.848344) with  --  ATHM2
20 SCL3  --  interacts with  --  AtIDD5; IDD5  --  interacts with  --  ATP8; AtRCD1; CEO; CEO1; RCD1
21 SCL3  --  interacts with  --  AtIDD5; IDD5  --  has similar expression pattern (mutual information value=0.900888) with  --  TCP3
22 SCL3  --  interacts with  --  ATISU1; ISU1  --  interacts with  --  AT5G06410
23 SCL3  --  interacts with  --  ATISU1; ISU1  --  interacts with  --  AT4G35110
24 SCL3  --  interacts with  --  ATISU1; ISU1  --  interacts with  --  AT4G25680
25 SCL3  --  interacts with  --  ATISU1; ISU1  --  interacts with  --  AT4G25660
26 SCL3  --  interacts with  --  ATISU1; ISU1  --  is the target gene of  --  ath-miR5654-3p
27 SCL3  --  interacts with  --  RGA1  --  regulates the expression of   --  LGO; SMR1
28 SCL3  --  interacts with  --  RGA1  --  regulates the expression of   --  ATMYC2
29 SCL3  --  interacts with  --  RGA1  --  is regulated by  --  JAI3
30 SCL3  --  interacts with  --  RGA1  --  interacts with  --  PDF2
31 SCL3  --  interacts with  --  RGA1  --  interacts with  --  ATML1
32 SCL3  --  interacts with  --  RGA1  --  interacts with  --  NF-YB2
33 SCL3  --  interacts with  --  RGA1  --  interacts with  --  ATHAP2B; HAP2B; NF-YA2; UNE8
34 SCL3  --  interacts with  --  RGA1  --  interacts with  --  ATHAP2A; EMB2220; HAP2A; NF-YA1
35 SCL3  --  interacts with  --  RGA1  --  interacts with  --  HAP5C; NF-YC9
36 SCL3  --  interacts with  --  RGA1  --  interacts with  --  NF-YC3
37 SCL3  --  interacts with  --  RGA1  --  interacts with  --  ARF8
38 SCL3  --  interacts with  --  RGA1  --  interacts with  --  ARF7
39 SCL3  --  interacts with  --  RGA1  --  interacts with  --  ARF6
40 SCL3  --  interacts with  --  RGA1  --  interacts with  --  AT1G35560
41 SCL3  --  interacts with  --  RGA1  --  interacts with  --  AT1G72010
42 SCL3  --  interacts with  --  RGA1  --  interacts with  --  AT-TCP20; ATTCP20; PCF1; TCP20
43 SCL3  --  interacts with  --  RGA1  --  interacts with  --  AtTCP15; TCP15
44 SCL3  --  interacts with  --  RGA1  --  interacts with  --  AT2G45680
45 SCL3  --  interacts with  --  RGA1  --  interacts with  --  TCP8
46 SCL3  --  interacts with  --  RGA1  --  interacts with  --  GL3; GL3; MYC6.2
47 SCL3  --  interacts with  --  RGA1  --  interacts with  --  ATMYC-2; EGL1; EGL3
48 SCL3  --  interacts with  --  RGA1  --  interacts with  --  ATGL1; ATMYB0; GL1; MYB0
49 SCL3  --  interacts with  --  RGA1  --  interacts with  --  TMKL1
50 SCL3  --  interacts with  --  RGA1  --  interacts with  --  ATGID1A
51 SCL3  --  interacts with  --  RGA1  --  interacts with  --  JAZ1
52 SCL3  --  interacts with  --  RGA1  --  interacts with  --  JAZ9
53 SCL3  --  interacts with  --  RGA1  --  interacts with  --  ATEBP; EBP; ERF72; RAP2.3
54 SCL3  --  interacts with  --  RGA1  --  interacts with  --  AT5G62260
55 SCL3  --  interacts with  --  RGA1  --  interacts with  --  AT5G12190
56 SCL3  --  interacts with  --  RGA1  --  interacts with  --  ABC1; ABCI8; ATABC1; ATNAP1; LAF6
57 SCL3  --  interacts with  --  RGA1  --  interacts with  --  AT3G13740
58 SCL3  --  interacts with  --  RGA1  --  interacts with  --  NDF4
59 SCL3  --  interacts with  --  RGA1  --  interacts with  --  FRL1
60 SCL3  --  interacts with  --  RGA1  --  interacts with  --  PAD1
61 SCL3  --  interacts with  --  RGA1  --  interacts with  --  ATHAM2; HAM2; LOM2
62 SCL3  --  interacts with  --  RGA1  --  interacts with  --  ATHAM1; HAM1; LOM1
63 SCL3  --  interacts with  --  RGA1  --  interacts with  --  BBX24; STO
64 SCL3  --  interacts with  --  RGA1  --  interacts with  --  AT5G59980
65 SCL3  --  interacts with  --  RGA1  --  interacts with  --  ATSAE2; EMB2764; SAE2
66 SCL3  --  interacts with  --  RGA1  --  interacts with  --  AT-SAE1-1; ATSAE1A; SAE1A
67 SCL3  --  interacts with  --  RGA1  --  interacts with  --  OTS1; ULP1D
68 SCL3  --  interacts with  --  RGA1  --  interacts with  --  ATMPK18; MPK18
69 SCL3  --  interacts with  --  RGA1  --  interacts with  --  ENY; IDD1
70 SCL3  --  interacts with  --  RGA1  --  interacts with  --  SLY1
71 SCL3  --  interacts with  --  RGA1  --  interacts with  --  ATGID1C
72 SCL3  --  interacts with  --  RGA1  --  interacts with  --  ATGID1B
73 SCL3  --  interacts with  --  RGA1  --  is a member of  --  RGA1 family100, transcription factor gene
74 SCL3  --  interacts with  --  RGA1  --  is a member of  --  RGA1 family99, transcription factor gene
75 SCL3  --  interacts with  --  RGA1  --  is a member of  --  polyubiquitinated della family, transcription factor gene
76 SCL3  --  interacts with  --  AT1G31240  --  interacts with  --  STG1; TAF10; TAFII15
77 SCL3  --  interacts with  --  AT1G31240  --  interacts with  --  AT5G13810
78 SCL3  --  interacts with  --  AT1G76030  --  interacts with  --  AT3G11280
79 SCL3  --  interacts with  --  AT1G76030  --  interacts with  --  ATHXK1; GIN2; HXK1
80 SCL3  --  regulates the expression of   --  della family, transcription factor gene  --  regulates the expression of   --  spatula
81 SCL3  --  regulates the expression of   --  della family, transcription factor gene  --  regulates the expression of   --  ALC
82 SCL3  --  regulates the expression of   --  della family, transcription factor gene  --  regulates the expression of   --  BES1
83 SCL3  --  regulates the expression of   --  della family, transcription factor gene  --  regulates the expression of   --  PIF7
84 SCL3  --  regulates the expression of   --  della family, transcription factor gene  --  regulates the expression of   --  PIF6; PIL2
85 SCL3  --  regulates the expression of   --  della family, transcription factor gene  --  regulates the expression of   --  PIF5; PIL6
86 SCL3  --  regulates the expression of   --  della family, transcription factor gene  --  regulates the expression of   --  PIFI
87 SCL3  --  regulates the expression of   --  della family, transcription factor gene  --  regulates the expression of   --  DAD1
88 SCL3  --  regulates the expression of   --  della family, transcription factor gene  --  regulates the expression of   --  GID1 family, coding gene
89 SCL3  --  regulates the expression of   --  della family, transcription factor gene  --  regulates the expression of   --  ATGA3OX1 family94, coding gene
90 SCL3  --  regulates the expression of   --  della family, transcription factor gene  --  regulates the expression of   --  AtGA20ox1/GA5
91 SCL3  --  regulates the expression of   --  della family, transcription factor gene  --  regulates the expression of   --  PIF4
92 SCL3  --  regulates the expression of   --  della family, transcription factor gene  --  regulates the expression of   --  PIF3
93 SCL3  --  regulates the expression of   --  della family, transcription factor gene  --  regulates the expression of   --  lim1
94 SCL3  --  regulates the expression of   --  della family, transcription factor gene  --  regulates the expression of   --  JAI3 family107, transcription factor gene
95 SCL3  --  regulates the expression of   --  della family, transcription factor gene  --  regulates the expression of   --  XERICO
96 SCL3  --  regulates the expression of   --  della family, transcription factor gene  --  is regulated by  --  InsP5
97 SCL3  --  regulates the expression of   --  della family, transcription factor gene  --  is regulated by  --  pil5
98 SCL3  --  regulates the expression of   --  della family, transcription factor gene  --  is regulated by  --  CBF1
99 SCL3  --  regulates the expression of   --  della family, transcription factor gene  --  is a member of  --  GA complex2
100 SCL3  --  regulates the expression of   --  della family, transcription factor gene  --  has family member  --  RGL3
101 SCL3  --  regulates the expression of   --  della family, transcription factor gene  --  has family member  --  RGL2
102 SCL3  --  regulates the expression of   --  della family, transcription factor gene  --  has family member  --  RGL
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact