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Location:  Home > Details for node phy family, coding gene
Type: Family GRN ID: gf06012 Name: phy family, coding gene
Annotation: coding gene family, members include Phytochrome A (PhyA), Phytochrome B (PhyB)
References:
  • Oh E, Kim J, Park E, Kim JI, Kang C, Choi G. PIL5, a phytochrome-interacting basic helix-loop-helix protein, is a key negative regulator of seed germination in Arabidopsis thaliana. Plant Cell. 2004 Nov;16(11):3045-58. Epub 2004 Oct 14. PubMed PMID: 15486102; PubMed Central PMCID: PMC527197.
 
Pathways: Gibberellins 
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Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

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Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 phy family, coding gene  --  interacts with  --  pil5
3 phy family, coding gene  --  has family member  --  Phytochrome B (PhyB)
4 phy family, coding gene  --  has family member  --  Phytochrome A (PhyA)
5 phy family, coding gene  --  interacts with  --  pil5  --  regulates the expression of   --  TED4
6 phy family, coding gene  --  interacts with  --  pil5  --  regulates the expression of   --  FeChII
7 phy family, coding gene  --  interacts with  --  pil5  --  regulates the expression of   --  AS1 family97, transcription factor gene
8 phy family, coding gene  --  interacts with  --  pil5  --  regulates the expression of   --  DAG1/PIL5
9 phy family, coding gene  --  interacts with  --  pil5  --  regulates the expression of   --  RGA1
10 phy family, coding gene  --  interacts with  --  pil5  --  regulates the expression of   --  ATGA2OX2
11 phy family, coding gene  --  interacts with  --  pil5  --  regulates the expression of   --  ATGA3OX1 family94, coding gene
12 phy family, coding gene  --  interacts with  --  pil5  --  regulates the expression of   --  della family, transcription factor gene
13 phy family, coding gene  --  interacts with  --  pil5  --  regulates the expression of   --  psy
14 phy family, coding gene  --  interacts with  --  pil5  --  regulates the expression of   --  ATFC-II; FC-II; FC2
15 phy family, coding gene  --  interacts with  --  pil5  --  regulates the expression of   --  som
16 phy family, coding gene  --  interacts with  --  pil5  --  regulates the expression of   --  PORC
17 phy family, coding gene  --  interacts with  --  pil5  --  interacts with  --  FBI1; HFR1; REP1; RSF1
18 phy family, coding gene  --  interacts with  --  pil5  --  interacts with  --  PIF5; PIL6
19 phy family, coding gene  --  interacts with  --  pil5  --  interacts with  --  PIF4
20 phy family, coding gene  --  interacts with  --  pil5  --  interacts with  --  PIF3
21 phy family, coding gene  --  interacts with  --  pil5  --  interacts with  --  AT4G37710
22 phy family, coding gene  --  interacts with  --  pil5  --  interacts with  --  ATDET1; DET1; FUS2
23 phy family, coding gene  --  interacts with  --  pil5  --  interacts with  --  HYH
24 phy family, coding gene  --  interacts with  --  pil5  --  interacts with  --  HY5
25 phy family, coding gene  --  interacts with  --  pil5  --  interacts with  --  FHY3
26 phy family, coding gene  --  interacts with  --  pil5  --  interacts with  --  PIF7
27 phy family, coding gene  --  interacts with  --  pil5  --  interacts with  --  PIF6; PIL2
28 phy family, coding gene  --  interacts with  --  pil5  --  interacts with  --  ABI3
29 phy family, coding gene  --  interacts with  --  pil5  --  interacts with  --  RGL2
30 phy family, coding gene  --  interacts with  --  pil5  --  interacts with  --  APRR1; AtTOC1; PRR1; TOC1
31 phy family, coding gene  --  interacts with  --  pil5  --  is modified by  --  ATCKA2; CKA2
32 phy family, coding gene  --  has family member  --  Phytochrome B (PhyB)  --  interacts with  --  PIN7
33 phy family, coding gene  --  has family member  --  Phytochrome B (PhyB)  --  interacts with  --  PIN3
34 phy family, coding gene  --  has family member  --  Phytochrome B (PhyB)  --  interacts with  --  ATPIN1
35 phy family, coding gene  --  has family member  --  Phytochrome B (PhyB)  --  interacts with  --  AtHB23; HB23
36 phy family, coding gene  --  has family member  --  Phytochrome B (PhyB)  --  interacts with  --  AT2G26190
37 phy family, coding gene  --  has family member  --  Phytochrome B (PhyB)  --  interacts with  --  AT1G74490
38 phy family, coding gene  --  has family member  --  Phytochrome B (PhyB)  --  interacts with  --  AtDBP1; DBP1
39 phy family, coding gene  --  has family member  --  Phytochrome B (PhyB)  --  interacts with  --  ADG1; APS1
40 phy family, coding gene  --  has family member  --  Phytochrome B (PhyB)  --  interacts with  --  PIL1
41 phy family, coding gene  --  has family member  --  Phytochrome B (PhyB)  --  interacts with  --  SPA1
42 phy family, coding gene  --  has family member  --  Phytochrome B (PhyB)  --  interacts with  --  PHYE
43 phy family, coding gene  --  has family member  --  Phytochrome B (PhyB)  --  interacts with  --  PHYD
44 phy family, coding gene  --  has family member  --  Phytochrome B (PhyB)  --  interacts with  --  ATVOZ2; VOZ2
45 phy family, coding gene  --  has family member  --  Phytochrome B (PhyB)  --  interacts with  --  ATVOZ1; VOZ1
46 phy family, coding gene  --  has family member  --  Phytochrome B (PhyB)  --  interacts with  --  GLT1; PGLCT
47 phy family, coding gene  --  has family member  --  Phytochrome B (PhyB)  --  interacts with  --  ACBK1; ATCNGC10; CNGC10
48 phy family, coding gene  --  has family member  --  Phytochrome B (PhyB)  --  interacts with  --  ATERDJ2A
49 phy family, coding gene  --  has family member  --  Phytochrome B (PhyB)  --  interacts with  --  ABCG10
50 phy family, coding gene  --  has family member  --  Phytochrome B (PhyB)  --  interacts with  --  ATGDU2; GDU2
51 phy family, coding gene  --  has family member  --  Phytochrome B (PhyB)  --  interacts with  --  ATCPK1; CPK1
52 phy family, coding gene  --  has family member  --  Phytochrome B (PhyB)  --  interacts with  --  ATCRY1; BLU1; CRY1; HY4; OOP2
53 phy family, coding gene  --  has family member  --  Phytochrome B (PhyB)  --  interacts with  --  COP1
54 phy family, coding gene  --  has family member  --  Phytochrome B (PhyB)  --  interacts with  --  ATNDPK2; NDPK IA; NDPK IA IA; NDPK1A; NDPK2
55 phy family, coding gene  --  has family member  --  Phytochrome B (PhyB)  --  interacts with  --  PKS1
56 phy family, coding gene  --  has family member  --  Phytochrome B (PhyB)  --  interacts with  --  AT-PHH1; ATCRY2; CRY2; FHA; PHH1
57 phy family, coding gene  --  has family member  --  Phytochrome B (PhyB)  --  interacts with  --  ARR4
58 phy family, coding gene  --  has family member  --  Phytochrome B (PhyB)  --  interacts with  --  ELF3; PYK20
59 phy family, coding gene  --  has family member  --  Phytochrome B (PhyB)  --  interacts with  --  AT1G72390
60 phy family, coding gene  --  has family member  --  Phytochrome B (PhyB)  --  interacts with  --  HMR; PTAC12
61 phy family, coding gene  --  has family member  --  Phytochrome B (PhyB)  --  interacts with  --  ATROPGEF11; PIRF1; ROPGEF11
62 phy family, coding gene  --  has family member  --  Phytochrome B (PhyB)  --  interacts with  --  IAA3
63 phy family, coding gene  --  has family member  --  Phytochrome B (PhyB)  --  interacts with  --  PAPP2C
64 phy family, coding gene  --  has family member  --  Phytochrome B (PhyB)  --  interacts with  --  ADO1; FKL2; LKP1; ZTL
65 phy family, coding gene  --  has family member  --  Phytochrome A (PhyA)  --  interacts with  --  FIN219; JAR1
66 phy family, coding gene  --  has family member  --  Phytochrome A (PhyA)  --  interacts with  --  FHY1; FRY1; PAT3
67 phy family, coding gene  --  has family member  --  Phytochrome A (PhyA)  --  interacts with  --  FHL
68 phy family, coding gene  --  has family member  --  Phytochrome A (PhyA)  --  interacts with  --  AT2G37680
69 phy family, coding gene  --  has family member  --  Phytochrome A (PhyA)  --  is regulated by  --  CAMTA3; SR1
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