psRNATarget:
A Plant Small RNA Target Analysis Server (2017 Update)
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Analysis
Submit small RNAs
Submit target candidates
Submit small RNAs and targets
Upload sRNA file:
[Load Demo Data]
or paste sequences:
- Upload limit: 25MiB, FASTA format or sequence only
Upload target file:
or paste sequences:
- Upload limit: 100MiB, FASTA format only
Scoring Schema
Schema V1 (2011 release)
Schema V2 (2017 release)
User-customized Schema
# of top targets:
Expectation:
Penalty for G:U pair:
Penalty for other mismatches:
Extra weight in seed region:
Seed region:
-
NT
# of mismatches allowed in seed region:
HSP size:
Allow bulge(gap)
Penalty for opening gap:
Penalty for extending gap:
Calculate target accessibility
Max UPE:
Flank length:
/
NT in up/downstream
Translation inhibition range:
NT -
NT
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