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A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
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Relationship Details
Type: TF-target gene regulation GRN ID: re265940 Name: TF-target gene regulation Validated: Y
Direction: Positive
Steps: Direct effect
Upstream node(s):
Downstream node(s):
Pathways: Auxins
References:
  • Shin R, Burch AY, Huppert KA, Tiwari SB, Murphy AS, Guilfoyle TJ, Schachtman DP. The Arabidopsis transcription factor MYB77 modulates auxin signal transduction. Plant Cell. 2007 Aug;19(8):2440-53. Epub 2007 Aug 3. PubMed PMID: 17675404; PubMed Central PMCID: PMC2002618.
  • Harper RM, Stowe-Evans EL, Luesse DR, Muto H, Tatematsu K, Watahiki MK, Yamamoto K, Liscum E. The NPH4 locus encodes the auxin response factor ARF7, a conditional regulator of differential growth in aerial Arabidopsis tissue. Plant Cell. 2000 May;12(5):757-70. PubMed PMID: 10810148; PubMed Central PMCID: PMC139925.
  • Okushima Y, Overvoorde PJ, Arima K, Alonso JM, Chan A, Chang C, Ecker JR, Hughes B, Lui A, Nguyen D, Onodera C, Quach H, Smith A, Yu G, Theologis A. Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: unique and overlapping functions of ARF7 and ARF19. Plant Cell. 2005 Feb;17(2):444-63. Epub 2005 Jan 19. PubMed PMID: 15659631; PubMed Central PMCID: PMC548818.
  • Okushima Y, Fukaki H, Onoda M, Theologis A, Tasaka M. ARF7 and ARF19 regulate lateral root formation via direct activation of LBD/ASL genes in Arabidopsis. Plant Cell. 2007 Jan;19(1):118-30. Epub 2007 Jan 26. PubMed PMID: 17259263; PubMed Central PMCID: PMC1820965.
  • Heyndrickx KS, Vandepoele K. Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol. 2012 Jul;159(3):884-901. doi: 10.1104/pp.112.196725. Epub 2012 May 15. PubMed PMID: 22589469; PubMed Central PMCID: PMC3387714.
  • Chassagne P, Cailleux N, Bonnet B, Scotte M, Michot F, Daragon A, Bercoff E. [Late intraperitoneal metastasis of hepatocellular carcinoma]. Gastroenterol Clin Biol. 1991;15(3):272. French. PubMed PMID: 1646138.
  • Yanhui C, Xiaoyuan Y, Kun H, Meihua L, Jigang L, Zhaofeng G, Zhiqiang L, Yunfei Z, Xiaoxiao W, Xiaoming Q, Yunping S, Li Z, Xiaohui D, Jingchu L, Xing-Wang D, Zhangliang C, Hongya G, Li-Jia Q. The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family. Plant Mol Biol. 2006 Jan;60(1):107-24. PubMed PMID: 16463103.
  • Staswick PE, Serban B, Rowe M, Tiryaki I, Maldonado MT, Maldonado MC, Suza W. Characterization of an Arabidopsis enzyme family that conjugates amino acids to indole-3-acetic acid. Plant Cell. 2005 Feb;17(2):616-27. Epub 2005 Jan 19. PubMed PMID: 15659623; PubMed Central PMCID: PMC548830.
  • Lee DJ, Park JW, Lee HW, Kim J. Genome-wide analysis of the auxin-responsive transcriptome downstream of iaa1 and its expression analysis reveal the diversity and complexity of auxin-regulated gene expression. J Exp Bot. 2009;60(13):3935-57. doi: 10.1093/jxb/erp230. Epub 2009 Aug 4. PubMed PMID: 19654206; PubMed Central PMCID: PMC2736900.
 
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