Welcome to HRGRN: A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks

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	Welcome to HRGRN A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks

Location: Home > Details for node AT5G54920

Type: Protein	GRN ID: np43046	Name:
Annotation:	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Gene Locus:	AT5G54920
Gene Expression (Affy ATH1 probeset):

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Protein modification

Protein-protein interaction
also include predicted relationship

Compound-protein interaction

TF-target gene regulation

Small RNA-target regulation
also include predicted relationship

Carrier and transported molecule

Catalytic chemical reaction

Co-expressed gene pair
with mutual information value >

Ignore nodes having > relationships

Relationship type:	protein modification catalytic chemical reaction protein-protein interaction compound-protein interaction TF-target gene regulation small RNA-target regulation co-expressed gene pair carrier and transported molecule family/complex and member
Relationship evidence:	Solid line: validated Dashed line: predicted
Relationship direction:	Arrow: positive T shape: negative None arrow: unknown or n/a
Hormone association:	Thicker line: hormone related relationship : hormone related Node
Node type:	Transcription factor or transcriptional regulator Compound Kinase Small regulatory RNA (miRNA & ta-siRNA) Other nodes

No.	Path
2	AT5G54920 -- interacts with -- PDE331
3	AT5G54920 -- interacts with -- AT1G24050
4	AT5G54920 -- interacts with -- PDE331 -- interacts with -- AtTCP11; TCP11
5	AT5G54920 -- interacts with -- PDE331 -- interacts with -- ATSOS2; CIPK24; SNRK3.11; SOS2
6	AT5G54920 -- interacts with -- PDE331 -- interacts with -- AT3G48240
7	AT5G54920 -- interacts with -- PDE331 -- interacts with -- AT3G16120
8	AT5G54920 -- interacts with -- AT1G24050 -- interacts with -- AT4G30330
9	AT5G54920 -- interacts with -- AT1G24050 -- interacts with -- AT3G14080
10	AT5G54920 -- interacts with -- AT1G24050 -- interacts with -- AT4G26990
11	AT5G54920 -- interacts with -- AT1G24050 -- interacts with -- AT1G04290
12	AT5G54920 -- interacts with -- AT1G24050 -- has similar expression pattern (mutual information value=0.849281) with -- AT5G18790
13	AT5G54920 -- interacts with -- AT1G24050 -- has similar expression pattern (mutual information value=0.849281) with -- AT3G06320

	Funding by the National Science Foundation	Funding by the Oklahoma Center for the Advancement of Science & Technology	Additional funding by the Samuel Roberts Noble Foundation

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