Welcome to HRGRN: A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks

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	Welcome to HRGRN A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks

Location: Home > Details for node AT5G06930

Type: Protein	GRN ID: np38707	Name:
Annotation:	LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2); Has 3369 Blast hits to 1526 proteins in 313 species: Archae - 2; Bacteria - 910; Metazoa - 754; Fungi - 336; Plants - 137; Viruses - 11; Other Eukaryotes - 1219 (source: NCBI BLink).
Gene Locus:	AT5G06930
Gene Expression (Affy ATH1 probeset):	250653_at

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Protein modification

Protein-protein interaction
also include predicted relationship

Compound-protein interaction

TF-target gene regulation

Small RNA-target regulation
also include predicted relationship

Carrier and transported molecule

Catalytic chemical reaction

Co-expressed gene pair
with mutual information value >

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Relationship type:	protein modification catalytic chemical reaction protein-protein interaction compound-protein interaction TF-target gene regulation small RNA-target regulation co-expressed gene pair carrier and transported molecule family/complex and member
Relationship evidence:	Solid line: validated Dashed line: predicted
Relationship direction:	Arrow: positive T shape: negative None arrow: unknown or n/a
Hormone association:	Thicker line: hormone related relationship : hormone related Node
Node type:	Transcription factor or transcriptional regulator Compound Kinase Small regulatory RNA (miRNA & ta-siRNA) Other nodes

No.	Path
2	AT5G06930 -- has similar expression pattern (mutual information value=0.808893) with -- GH3.17
3	AT5G06930 -- has similar expression pattern (mutual information value=0.808893) with -- GH3.17 -- has similar expression pattern (mutual information value=0.965422) with -- AT2G43610
4	AT5G06930 -- has similar expression pattern (mutual information value=0.808893) with -- GH3.17 -- has similar expression pattern (mutual information value=1.03767) with -- ATWRKY9; WRKY9
5	AT5G06930 -- has similar expression pattern (mutual information value=0.808893) with -- GH3.17 -- has similar expression pattern (mutual information value=0.821416) with -- CYP706A7
6	AT5G06930 -- has similar expression pattern (mutual information value=0.808893) with -- GH3.17 -- has similar expression pattern (mutual information value=0.891269) with -- ACAT2; EMB1276
7	AT5G06930 -- has similar expression pattern (mutual information value=0.808893) with -- GH3.17 -- is a member of -- ykd1 family22, transcription factor gene

	Funding by the National Science Foundation	Funding by the Oklahoma Center for the Advancement of Science & Technology	Additional funding by the Samuel Roberts Noble Foundation

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