Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT4G27860
Type: Protein GRN ID: np33992 Name:
Annotation: vacuolar iron transporter (VIT) family protein [TCDB:1.C.1.2] [TCDB:3.A.1.1] [TCDB:3.A.7.12] [TCDB:3.A.9.1] [TCDB:8.A.25.1] [TCDB:9.A.14.1]
Gene Locus: AT4G27860
Gene Expression (Affy ATH1 probeset): 253842_at    
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT4G27860  --  has similar expression pattern (mutual information value=0.807206) with  --  AT1G62660
3 AT4G27860  --  has similar expression pattern (mutual information value=0.904374) with  --  AT1G22550
4 AT4G27860  --  has similar expression pattern (mutual information value=0.971361) with  --  JAL30; PBP1
5 AT4G27860  --  has similar expression pattern (mutual information value=0.971361) with  --  JAL31
6 AT4G27860  --  has similar expression pattern (mutual information value=1.00801) with  --  BGLU23; LEB; PSR3.1; PYK10
7 AT4G27860  --  has similar expression pattern (mutual information value=0.981861) with  --  NAI2
8 AT4G27860  --  has similar expression pattern (mutual information value=0.807206) with  --  AT1G62660  --  interacts with  --  AT3G24570
9 AT4G27860  --  has similar expression pattern (mutual information value=0.807206) with  --  AT1G62660  --  has similar expression pattern (mutual information value=0.951384) with  --  ATPAP8; PAP8
10 AT4G27860  --  has similar expression pattern (mutual information value=0.807206) with  --  AT1G62660  --  has similar expression pattern (mutual information value=0.80079) with  --  MLP34
11 AT4G27860  --  has similar expression pattern (mutual information value=0.807206) with  --  AT1G62660  --  has similar expression pattern (mutual information value=0.867262) with  --  NRT1.5
12 AT4G27860  --  has similar expression pattern (mutual information value=0.807206) with  --  AT1G62660  --  has similar expression pattern (mutual information value=0.89532) with  --  NSP3
13 AT4G27860  --  has similar expression pattern (mutual information value=0.807206) with  --  AT1G62660  --  has similar expression pattern (mutual information value=0.89532) with  --  ATMLP-470; ATNSP1; NSP1
14 AT4G27860  --  has similar expression pattern (mutual information value=0.807206) with  --  AT1G62660  --  has similar expression pattern (mutual information value=0.89532) with  --  NSP4
15 AT4G27860  --  has similar expression pattern (mutual information value=0.807206) with  --  AT1G62660  --  has similar expression pattern (mutual information value=1.10133) with  --  AtSWEET16; SWEET16
16 AT4G27860  --  has similar expression pattern (mutual information value=0.807206) with  --  AT1G62660  --  has similar expression pattern (mutual information value=0.839388) with  --  ZW9
17 AT4G27860  --  has similar expression pattern (mutual information value=0.807206) with  --  AT1G62660  --  has similar expression pattern (mutual information value=0.969027) with  --  AT4G12520
18 AT4G27860  --  has similar expression pattern (mutual information value=0.807206) with  --  AT1G62660  --  has similar expression pattern (mutual information value=0.969027) with  --  AT4G12510
19 AT4G27860  --  has similar expression pattern (mutual information value=0.807206) with  --  AT1G62660  --  has similar expression pattern (mutual information value=0.98907) with  --  AT5G46890
20 AT4G27860  --  has similar expression pattern (mutual information value=0.807206) with  --  AT1G62660  --  has similar expression pattern (mutual information value=0.98907) with  --  AT5G46900
21 AT4G27860  --  has similar expression pattern (mutual information value=0.807206) with  --  AT1G62660  --  has similar expression pattern (mutual information value=0.953934) with  --  AGP14; ATAGP14
22 AT4G27860  --  has similar expression pattern (mutual information value=0.807206) with  --  AT1G62660  --  has similar expression pattern (mutual information value=0.985271) with  --  PIP2;4; PIP2F
23 AT4G27860  --  has similar expression pattern (mutual information value=0.807206) with  --  AT1G62660  --  has similar expression pattern (mutual information value=0.890175) with  --  AtPLAIVB; PLA IVB; PLP5
24 AT4G27860  --  has similar expression pattern (mutual information value=0.807206) with  --  AT1G62660  --  has similar expression pattern (mutual information value=0.890175) with  --  AtPLAIVA; PLA IVA; PLP1
25 AT4G27860  --  has similar expression pattern (mutual information value=0.904374) with  --  AT1G22550  --  interacts with  --  AT5G15240
26 AT4G27860  --  has similar expression pattern (mutual information value=0.904374) with  --  AT1G22550  --  interacts with  --  ATGAT1; GAT1
27 AT4G27860  --  has similar expression pattern (mutual information value=0.904374) with  --  AT1G22550  --  interacts with  --  ATKCO5; ATTPK5; KCO5; TPK5
28 AT4G27860  --  has similar expression pattern (mutual information value=0.904374) with  --  AT1G22550  --  interacts with  --  TMT2
29 AT4G27860  --  has similar expression pattern (mutual information value=0.904374) with  --  AT1G22550  --  transport  --  NH4+
30 AT4G27860  --  has similar expression pattern (mutual information value=0.904374) with  --  AT1G22550  --  transport  --  Methylamine
31 AT4G27860  --  has similar expression pattern (mutual information value=0.904374) with  --  AT1G22550  --  has similar expression pattern (mutual information value=0.800932) with  --  AT3G16450
32 AT4G27860  --  has similar expression pattern (mutual information value=0.971361) with  --  JAL30; PBP1  --  has similar expression pattern (mutual information value=0.822125) with  --  LAC3
33 AT4G27860  --  has similar expression pattern (mutual information value=0.971361) with  --  JAL30; PBP1  --  has similar expression pattern (mutual information value=0.80906) with  --  AT5G23830
34 AT4G27860  --  has similar expression pattern (mutual information value=0.971361) with  --  JAL30; PBP1  --  has similar expression pattern (mutual information value=0.803928) with  --  ANNAT2
35 AT4G27860  --  has similar expression pattern (mutual information value=1.00801) with  --  BGLU23; LEB; PSR3.1; PYK10  --  has similar expression pattern (mutual information value=1.18888) with  --  AT3G20370
36 AT4G27860  --  has similar expression pattern (mutual information value=1.00801) with  --  BGLU23; LEB; PSR3.1; PYK10  --  has similar expression pattern (mutual information value=0.911952) with  --  scpl1
37 AT4G27860  --  has similar expression pattern (mutual information value=1.00801) with  --  BGLU23; LEB; PSR3.1; PYK10  --  has similar expression pattern (mutual information value=0.911952) with  --  scpl2
38 AT4G27860  --  has similar expression pattern (mutual information value=1.00801) with  --  BGLU23; LEB; PSR3.1; PYK10  --  has similar expression pattern (mutual information value=0.889916) with  --  AT4G12545
39 AT4G27860  --  has similar expression pattern (mutual information value=1.00801) with  --  BGLU23; LEB; PSR3.1; PYK10  --  has similar expression pattern (mutual information value=0.889916) with  --  AIR1
40 AT4G27860  --  has similar expression pattern (mutual information value=1.00801) with  --  BGLU23; LEB; PSR3.1; PYK10  --  has similar expression pattern (mutual information value=1.21262) with  --  AT4G29270
41 AT4G27860  --  has similar expression pattern (mutual information value=1.00801) with  --  BGLU23; LEB; PSR3.1; PYK10  --  has similar expression pattern (mutual information value=0.824906) with  --  AT3G45710
42 AT4G27860  --  has similar expression pattern (mutual information value=1.00801) with  --  BGLU23; LEB; PSR3.1; PYK10  --  has similar expression pattern (mutual information value=0.904409) with  --  AT5G23820
43 AT4G27860  --  has similar expression pattern (mutual information value=1.00801) with  --  BGLU23; LEB; PSR3.1; PYK10  --  has similar expression pattern (mutual information value=0.950843) with  --  CYP705A5; THAD; THAD1
44 AT4G27860  --  has similar expression pattern (mutual information value=0.981861) with  --  NAI2  --  has similar expression pattern (mutual information value=1.00029) with  --  AT3G16460
45 AT4G27860  --  has similar expression pattern (mutual information value=0.981861) with  --  NAI2  --  has similar expression pattern (mutual information value=0.815901) with  --  AT3G21770
46 AT4G27860  --  has similar expression pattern (mutual information value=0.981861) with  --  NAI2  --  has similar expression pattern (mutual information value=0.937163) with  --  AMT1;5
47 AT4G27860  --  has similar expression pattern (mutual information value=0.981861) with  --  NAI2  --  has similar expression pattern (mutual information value=0.937163) with  --  AMT1;3; ATAMT1;3
48 AT4G27860  --  has similar expression pattern (mutual information value=0.981861) with  --  NAI2  --  has similar expression pattern (mutual information value=0.838704) with  --  AT4G13580
49 AT4G27860  --  has similar expression pattern (mutual information value=0.981861) with  --  NAI2  --  has similar expression pattern (mutual information value=0.84441) with  --  ATFLS5; FLS5
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact