Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT3G01680
Type: Protein GRN ID: np28493 Name:
Annotation: CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Gene Locus: AT3G01680
Gene Expression (Affy ATH1 probeset): 259180_at    
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT3G01680  --  interacts with  --  AT3G01670
3 AT3G01680  --  has similar expression pattern (mutual information value=0.811079) with  --  AT5G63710
4 AT3G01680  --  interacts with  --  AT3G01670  --  interacts with  --  ENA
5 AT3G01680  --  interacts with  --  AT3G01670  --  interacts with  --  AT5G41350
6 AT3G01680  --  interacts with  --  AT3G01670  --  interacts with  --  SUA
7 AT3G01680  --  interacts with  --  AT3G01670  --  interacts with  --  AT5G51570
8 AT3G01680  --  interacts with  --  AT3G01670  --  interacts with  --  porA
9 AT3G01680  --  interacts with  --  AT3G01670  --  interacts with  --  AT3G18380
10 AT3G01680  --  interacts with  --  AT3G01670  --  interacts with  --  AtGRXS17; GRXS17
11 AT3G01680  --  interacts with  --  AT3G01670  --  interacts with  --  AT3G04860
12 AT3G01680  --  interacts with  --  AT3G01670  --  interacts with  --  AT4G22720
13 AT3G01680  --  interacts with  --  AT3G01670  --  interacts with  --  AT3G51180
14 AT3G01680  --  interacts with  --  AT3G01670  --  interacts with  --  ATGRX4; GRX4
15 AT3G01680  --  interacts with  --  AT3G01670  --  interacts with  --  AT1G29120
16 AT3G01680  --  interacts with  --  AT3G01670  --  interacts with  --  AT1G49590
17 AT3G01680  --  interacts with  --  AT3G01670  --  interacts with  --  AGO2
18 AT3G01680  --  interacts with  --  AT3G01670  --  interacts with  --  AT2G38300
19 AT3G01680  --  interacts with  --  AT3G01670  --  interacts with  --  AT1G49850
20 AT3G01680  --  interacts with  --  AT3G01670  --  interacts with  --  AT1G49840
21 AT3G01680  --  interacts with  --  AT3G01670  --  has similar expression pattern (mutual information value=0.84144) with  --  ATCLV1; CLV1; FAS3; FLO5
22 AT3G01680  --  interacts with  --  AT3G01670  --  has similar expression pattern (mutual information value=0.837219) with  --  AtENODL9; ENODL9
23 AT3G01680  --  has similar expression pattern (mutual information value=0.811079) with  --  AT5G63710  --  interacts with  --  KUP10
24 AT3G01680  --  has similar expression pattern (mutual information value=0.811079) with  --  AT5G63710  --  interacts with  --  CHAL; EPFL6
25 AT3G01680  --  has similar expression pattern (mutual information value=0.811079) with  --  AT5G63710  --  interacts with  --  ATWAKL10; WAKL10
26 AT3G01680  --  has similar expression pattern (mutual information value=0.811079) with  --  AT5G63710  --  interacts with  --  AT4G23090
27 AT3G01680  --  has similar expression pattern (mutual information value=0.811079) with  --  AT5G63710  --  interacts with  --  AATL2; ATLHT2; LHT2
28 AT3G01680  --  has similar expression pattern (mutual information value=0.811079) with  --  AT5G63710  --  has similar expression pattern (mutual information value=0.941565) with  --  ARFB1A; ATARFB1A
29 AT3G01680  --  has similar expression pattern (mutual information value=0.811079) with  --  AT5G63710  --  has similar expression pattern (mutual information value=1.07708) with  --  OBP2
30 AT3G01680  --  has similar expression pattern (mutual information value=0.811079) with  --  AT5G63710  --  has similar expression pattern (mutual information value=1.12315) with  --  AT1G67870
31 AT3G01680  --  has similar expression pattern (mutual information value=0.811079) with  --  AT5G63710  --  has similar expression pattern (mutual information value=1.14294) with  --  AT1G64370
32 AT3G01680  --  has similar expression pattern (mutual information value=0.811079) with  --  AT5G63710  --  has similar expression pattern (mutual information value=1.15067) with  --  ATPP2-A1; ATPP2A-1; PP2-A1
33 AT3G01680  --  has similar expression pattern (mutual information value=0.811079) with  --  AT5G63710  --  has similar expression pattern (mutual information value=0.844984) with  --  AT4G34560
34 AT3G01680  --  has similar expression pattern (mutual information value=0.811079) with  --  AT5G63710  --  has similar expression pattern (mutual information value=1.08726) with  --  AT5G49660
35 AT3G01680  --  has similar expression pattern (mutual information value=0.811079) with  --  AT5G63710  --  has similar expression pattern (mutual information value=1.04922) with  --  AAP4
36 AT3G01680  --  has similar expression pattern (mutual information value=0.811079) with  --  AT5G63710  --  has similar expression pattern (mutual information value=0.922242) with  --  AAP2
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact