Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT3G54970
Type: Protein GRN ID: np26132 Name:
Annotation: D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein
Gene Locus: AT3G54970
Gene Expression (Affy ATH1 probeset): 251812_at    
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT3G54970  --  has similar expression pattern (mutual information value=0.819558) with  --  AT3G51270
3 AT3G54970  --  has similar expression pattern (mutual information value=0.819558) with  --  AT3G51270  --  has similar expression pattern (mutual information value=1.10304) with  --  AT2G47790
4 AT3G54970  --  has similar expression pattern (mutual information value=0.819558) with  --  AT3G51270  --  has similar expression pattern (mutual information value=1.0773) with  --  AT2G18520
5 AT3G54970  --  has similar expression pattern (mutual information value=0.819558) with  --  AT3G51270  --  has similar expression pattern (mutual information value=0.830459) with  --  AT1G06530
6 AT3G54970  --  has similar expression pattern (mutual information value=0.819558) with  --  AT3G51270  --  has similar expression pattern (mutual information value=0.99207) with  --  AT1G11240
7 AT3G54970  --  has similar expression pattern (mutual information value=0.819558) with  --  AT3G51270  --  has similar expression pattern (mutual information value=0.987077) with  --  ATPC2
8 AT3G54970  --  has similar expression pattern (mutual information value=0.819558) with  --  AT3G51270  --  has similar expression pattern (mutual information value=1.02645) with  --  CDC48C; emb1354
9 AT3G54970  --  has similar expression pattern (mutual information value=0.819558) with  --  AT3G51270  --  has similar expression pattern (mutual information value=0.970791) with  --  AT3G19650
10 AT3G54970  --  has similar expression pattern (mutual information value=0.819558) with  --  AT3G51270  --  has similar expression pattern (mutual information value=1.01876) with  --  AT2G34040
11 AT3G54970  --  has similar expression pattern (mutual information value=0.819558) with  --  AT3G51270  --  has similar expression pattern (mutual information value=1.05502) with  --  ABO1; AtELP1; ELO2
12 AT3G54970  --  has similar expression pattern (mutual information value=0.819558) with  --  AT3G51270  --  has similar expression pattern (mutual information value=0.891126) with  --  NACA3
13 AT3G54970  --  has similar expression pattern (mutual information value=0.819558) with  --  AT3G51270  --  has similar expression pattern (mutual information value=0.980626) with  --  ATCBP20
14 AT3G54970  --  has similar expression pattern (mutual information value=0.819558) with  --  AT3G51270  --  has similar expression pattern (mutual information value=0.846347) with  --  MEF1
15 AT3G54970  --  has similar expression pattern (mutual information value=0.819558) with  --  AT3G51270  --  has similar expression pattern (mutual information value=0.996728) with  --  AT5G53800
16 AT3G54970  --  has similar expression pattern (mutual information value=0.819558) with  --  AT3G51270  --  has similar expression pattern (mutual information value=1.02914) with  --  AT5G57120
17 AT3G54970  --  has similar expression pattern (mutual information value=0.819558) with  --  AT3G51270  --  has similar expression pattern (mutual information value=0.856453) with  --  AT5G27010
18 AT3G54970  --  has similar expression pattern (mutual information value=0.819558) with  --  AT3G51270  --  has similar expression pattern (mutual information value=0.856453) with  --  AT5G06350
19 AT3G54970  --  has similar expression pattern (mutual information value=0.819558) with  --  AT3G51270  --  is the target gene of  --  ath-miR5631
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact