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A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT3G46960
Type: Protein GRN ID: np25951 Name:
Annotation: RNA helicase, ATP-dependent, SK12/DOB1 protein
Gene Locus: AT3G46960
Gene Expression (Affy ATH1 probeset): 252443_at    
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 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

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Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT3G46960  --  has similar expression pattern (mutual information value=0.840555) with  --  MED8
3 AT3G46960  --  has similar expression pattern (mutual information value=0.836855) with  --  AT5G49880
4 AT3G46960  --  has similar expression pattern (mutual information value=0.840555) with  --  MED8  --  has similar expression pattern (mutual information value=0.877449) with  --  emb1579
5 AT3G46960  --  has similar expression pattern (mutual information value=0.836855) with  --  AT5G49880  --  interacts with  --  SUF4
6 AT3G46960  --  has similar expression pattern (mutual information value=0.836855) with  --  AT5G49880  --  interacts with  --  AtTPR; NUA
7 AT3G46960  --  has similar expression pattern (mutual information value=0.836855) with  --  AT5G49880  --  has similar expression pattern (mutual information value=0.82344) with  --  AT2G38370
8 AT3G46960  --  has similar expression pattern (mutual information value=0.836855) with  --  AT5G49880  --  has similar expression pattern (mutual information value=0.994809) with  --  ATSCC3; SCC3
9 AT3G46960  --  has similar expression pattern (mutual information value=0.836855) with  --  AT5G49880  --  has similar expression pattern (mutual information value=0.812567) with  --  ATRPA1A; ATRPA70A; RPA1A; RPA70A
10 AT3G46960  --  has similar expression pattern (mutual information value=0.836855) with  --  AT5G49880  --  has similar expression pattern (mutual information value=0.955388) with  --  emb1220
11 AT3G46960  --  has similar expression pattern (mutual information value=0.836855) with  --  AT5G49880  --  has similar expression pattern (mutual information value=0.955388) with  --  AT3G60610
12 AT3G46960  --  has similar expression pattern (mutual information value=0.836855) with  --  AT5G49880  --  has similar expression pattern (mutual information value=0.819378) with  --  AT2G35920
13 AT3G46960  --  has similar expression pattern (mutual information value=0.836855) with  --  AT5G49880  --  has similar expression pattern (mutual information value=0.894074) with  --  At-RSZ21; RSZ21; RSZP21; SRZ-21; SRZ21
14 AT3G46960  --  has similar expression pattern (mutual information value=0.836855) with  --  AT5G49880  --  has similar expression pattern (mutual information value=0.922935) with  --  GIF2
15 AT3G46960  --  has similar expression pattern (mutual information value=0.836855) with  --  AT5G49880  --  has similar expression pattern (mutual information value=0.842995) with  --  AT1G05410
16 AT3G46960  --  has similar expression pattern (mutual information value=0.836855) with  --  AT5G49880  --  has similar expression pattern (mutual information value=0.825706) with  --  AT3G19630
17 AT3G46960  --  has similar expression pattern (mutual information value=0.836855) with  --  AT5G49880  --  has similar expression pattern (mutual information value=0.882257) with  --  AT3G24255
18 AT3G46960  --  has similar expression pattern (mutual information value=0.836855) with  --  AT5G49880  --  has similar expression pattern (mutual information value=0.882257) with  --  AT3G23910
19 AT3G46960  --  has similar expression pattern (mutual information value=0.836855) with  --  AT5G49880  --  has similar expression pattern (mutual information value=0.819851) with  --  AT3G22220
20 AT3G46960  --  has similar expression pattern (mutual information value=0.836855) with  --  AT5G49880  --  has similar expression pattern (mutual information value=0.83771) with  --  AT1G56290
21 AT3G46960  --  has similar expression pattern (mutual information value=0.836855) with  --  AT5G49880  --  has similar expression pattern (mutual information value=0.804109) with  --  AT4G02720
22 AT3G46960  --  has similar expression pattern (mutual information value=0.836855) with  --  AT5G49880  --  has similar expression pattern (mutual information value=0.800065) with  --  AT3G45830
23 AT3G46960  --  has similar expression pattern (mutual information value=0.836855) with  --  AT5G49880  --  has similar expression pattern (mutual information value=0.844265) with  --  AT3G46920
24 AT3G46960  --  has similar expression pattern (mutual information value=0.836855) with  --  AT5G49880  --  has similar expression pattern (mutual information value=0.870452) with  --  AT5G04910
25 AT3G46960  --  has similar expression pattern (mutual information value=0.836855) with  --  AT5G49880  --  has similar expression pattern (mutual information value=0.867766) with  --  EMB2789; MOS7
26 AT3G46960  --  has similar expression pattern (mutual information value=0.836855) with  --  AT5G49880  --  has similar expression pattern (mutual information value=0.820805) with  --  AT5G07360
27 AT3G46960  --  has similar expression pattern (mutual information value=0.836855) with  --  AT5G49880  --  has similar expression pattern (mutual information value=0.903314) with  --  AT5G16505
28 AT3G46960  --  has similar expression pattern (mutual information value=0.836855) with  --  AT5G49880  --  has similar expression pattern (mutual information value=0.944852) with  --  AT5G16680
29 AT3G46960  --  has similar expression pattern (mutual information value=0.836855) with  --  AT5G49880  --  has similar expression pattern (mutual information value=0.904899) with  --  AT5G42220
30 AT3G46960  --  has similar expression pattern (mutual information value=0.836855) with  --  AT5G49880  --  has similar expression pattern (mutual information value=0.835189) with  --  AT5G46840
31 AT3G46960  --  has similar expression pattern (mutual information value=0.836855) with  --  AT5G49880  --  has similar expression pattern (mutual information value=0.837945) with  --  ELF9
32 AT3G46960  --  has similar expression pattern (mutual information value=0.836855) with  --  AT5G49880  --  has similar expression pattern (mutual information value=0.813037) with  --  AT4G16440
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