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A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT1G13990
Type: Protein GRN ID: np18088 Name:
Annotation: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3110 (InterPro:IPR021503); Has 25 Blast hits to 25 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Gene Locus: AT1G13990
Gene Expression (Affy ATH1 probeset): 262607_at    
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 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

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Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT1G13990  --  interacts with  --  AT4G22240
3 AT1G13990  --  has similar expression pattern (mutual information value=0.809306) with  --  AT1G21680
4 AT1G13990  --  interacts with  --  AT4G22240  --  interacts with  --  FIB
5 AT1G13990  --  interacts with  --  AT4G22240  --  interacts with  --  EMB3119
6 AT1G13990  --  interacts with  --  AT4G22240  --  interacts with  --  ATPC1
7 AT1G13990  --  interacts with  --  AT4G22240  --  interacts with  --  ATVDAC3; VDAC3
8 AT1G13990  --  interacts with  --  AT4G22240  --  interacts with  --  AT4G28180
9 AT1G13990  --  interacts with  --  AT4G22240  --  interacts with  --  AT5G22620
10 AT1G13990  --  interacts with  --  AT4G22240  --  interacts with  --  ATSS4; SS4; SSIV
11 AT1G13990  --  interacts with  --  AT4G22240  --  interacts with  --  ATIMPALPHA3; IMPA-3; MOS6
12 AT1G13990  --  interacts with  --  AT4G22240  --  interacts with  --  AT3G61310
13 AT1G13990  --  interacts with  --  AT4G22240  --  interacts with  --  ICL
14 AT1G13990  --  interacts with  --  AT4G22240  --  interacts with  --  ENA
15 AT1G13990  --  interacts with  --  AT4G22240  --  has similar expression pattern (mutual information value=0.947211) with  --  AT2G23840
16 AT1G13990  --  interacts with  --  AT4G22240  --  has similar expression pattern (mutual information value=0.874373) with  --  PSBR
17 AT1G13990  --  has similar expression pattern (mutual information value=0.809306) with  --  AT1G21680  --  transport  --  Cl-
18 AT1G13990  --  has similar expression pattern (mutual information value=0.809306) with  --  AT1G21680  --  transport  --  Guanosine
19 AT1G13990  --  has similar expression pattern (mutual information value=0.809306) with  --  AT1G21680  --  transport  --  Xanthine
20 AT1G13990  --  has similar expression pattern (mutual information value=0.809306) with  --  AT1G21680  --  transport  --  Inosine
21 AT1G13990  --  has similar expression pattern (mutual information value=0.809306) with  --  AT1G21680  --  transport  --  Hypoxanthine
22 AT1G13990  --  has similar expression pattern (mutual information value=0.809306) with  --  AT1G21680  --  transport  --  Guanine
23 AT1G13990  --  has similar expression pattern (mutual information value=0.809306) with  --  AT1G21680  --  transport  --  Adenine
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