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A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT1G16840
Type: Protein GRN ID: np15233 Name:
Annotation: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Gene Locus: AT1G16840
Gene Expression (Affy ATH1 probeset): 256117_at    
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 Protein modification
 Protein-protein interaction
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 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
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 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
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Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT1G16840  --  has similar expression pattern (mutual information value=0.820902) with  --  AT3G14595
3 AT1G16840  --  has similar expression pattern (mutual information value=0.836719) with  --  APG8H; ATG8I
4 AT1G16840  --  has similar expression pattern (mutual information value=0.828227) with  --  AT5G62200
5 AT1G16840  --  has similar expression pattern (mutual information value=0.836719) with  --  APG8H; ATG8I  --  interacts with  --  AtNBR1; NBR1
6 AT1G16840  --  has similar expression pattern (mutual information value=0.836719) with  --  APG8H; ATG8I  --  has similar expression pattern (mutual information value=0.808942) with  --  APG12; ATATG12; ATG12A
7 AT1G16840  --  has similar expression pattern (mutual information value=0.836719) with  --  APG8H; ATG8I  --  has similar expression pattern (mutual information value=0.867546) with  --  ATECH2; ECH2
8 AT1G16840  --  has similar expression pattern (mutual information value=0.836719) with  --  APG8H; ATG8I  --  has similar expression pattern (mutual information value=0.850901) with  --  RHB1A
9 AT1G16840  --  has similar expression pattern (mutual information value=0.836719) with  --  APG8H; ATG8I  --  has similar expression pattern (mutual information value=0.811913) with  --  VPS28-1; VPS28-2
10 AT1G16840  --  has similar expression pattern (mutual information value=0.828227) with  --  AT5G62200  --  has similar expression pattern (mutual information value=0.848847) with  --  CUTA
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