Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT1G28120
Type: Protein GRN ID: np12973 Name:
Annotation: CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323), Ubiquitin thioesterase Otubain (InterPro:IPR016615), Peptidase C65, otubain (InterPro:IPR019400); Has 413 Blast hits to 411 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 83; Plants - 88; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
Gene Locus: AT1G28120
Gene Expression (Affy ATH1 probeset): 259587_at    
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT1G28120  --  interacts with  --  UBC18
3 AT1G28120  --  interacts with  --  UBC13B; UBC36
4 AT1G28120  --  interacts with  --  UBC18  --  interacts with  --  AT5G19080
5 AT1G28120  --  interacts with  --  UBC18  --  interacts with  --  AT5G19430
6 AT1G28120  --  interacts with  --  UBC18  --  interacts with  --  AT2G37150
7 AT1G28120  --  interacts with  --  UBC13B; UBC36  --  interacts with  --  AT5G15790
8 AT1G28120  --  interacts with  --  UBC13B; UBC36  --  interacts with  --  AIRP1; AtAIRP1
9 AT1G28120  --  interacts with  --  UBC13B; UBC36  --  interacts with  --  AT5G37890
10 AT1G28120  --  interacts with  --  UBC13B; UBC36  --  interacts with  --  MMZ4; UEV1D; UEV1D-4
11 AT1G28120  --  interacts with  --  UBC13B; UBC36  --  interacts with  --  MMZ3; UEV1C
12 AT1G28120  --  interacts with  --  UBC13B; UBC36  --  interacts with  --  MMZ2; UEV1B
13 AT1G28120  --  interacts with  --  UBC13B; UBC36  --  interacts with  --  MMZ1; UEV1A
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact