Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT1G29530
Type: Protein GRN ID: np11319 Name:
Annotation: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34310.3); Has 84 Blast hits to 78 proteins in 24 species: Archae - 2; Bacteria - 4; Metazoa - 9; Fungi - 8; Plants - 55; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Gene Locus: AT1G29530
Gene Expression (Affy ATH1 probeset): 259775_at    
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT1G29530  --  has similar expression pattern (mutual information value=0.852879) with  --  AT3G22210
3 AT1G29530  --  has similar expression pattern (mutual information value=0.852879) with  --  AT3G22210  --  has similar expression pattern (mutual information value=1.13894) with  --  ATFC-II; FC-II; FC2
4 AT1G29530  --  has similar expression pattern (mutual information value=0.852879) with  --  AT3G22210  --  has similar expression pattern (mutual information value=1.0865) with  --  AT2G01870
5 AT1G29530  --  has similar expression pattern (mutual information value=0.852879) with  --  AT3G22210  --  has similar expression pattern (mutual information value=1.18578) with  --  ABCD2
6 AT1G29530  --  has similar expression pattern (mutual information value=0.852879) with  --  AT3G22210  --  has similar expression pattern (mutual information value=1.18907) with  --  AT1G54500
7 AT1G29530  --  has similar expression pattern (mutual information value=0.852879) with  --  AT3G22210  --  has similar expression pattern (mutual information value=0.885426) with  --  AAE14
8 AT1G29530  --  has similar expression pattern (mutual information value=0.852879) with  --  AT3G22210  --  has similar expression pattern (mutual information value=1.0161) with  --  AT1G14270
9 AT1G29530  --  has similar expression pattern (mutual information value=0.852879) with  --  AT3G22210  --  has similar expression pattern (mutual information value=1.18011) with  --  AT1G76730
10 AT1G29530  --  has similar expression pattern (mutual information value=0.852879) with  --  AT3G22210  --  has similar expression pattern (mutual information value=1.28155) with  --  AT3G01660
11 AT1G29530  --  has similar expression pattern (mutual information value=0.852879) with  --  AT3G22210  --  has similar expression pattern (mutual information value=1.2272) with  --  AT3G12685
12 AT1G29530  --  has similar expression pattern (mutual information value=0.852879) with  --  AT3G22210  --  has similar expression pattern (mutual information value=1.44236) with  --  DEG5; DEGP5; HHOA
13 AT1G29530  --  has similar expression pattern (mutual information value=0.852879) with  --  AT3G22210  --  has similar expression pattern (mutual information value=1.16415) with  --  AT4G19985
14 AT1G29530  --  has similar expression pattern (mutual information value=0.852879) with  --  AT3G22210  --  has similar expression pattern (mutual information value=1.44649) with  --  AT4G34090
15 AT1G29530  --  has similar expression pattern (mutual information value=0.852879) with  --  AT3G22210  --  has similar expression pattern (mutual information value=1.20467) with  --  FKBP16-2
16 AT1G29530  --  has similar expression pattern (mutual information value=0.852879) with  --  AT3G22210  --  has similar expression pattern (mutual information value=1.14432) with  --  CYP97C1; LUT1
17 AT1G29530  --  has similar expression pattern (mutual information value=0.852879) with  --  AT3G22210  --  has similar expression pattern (mutual information value=0.943039) with  --  AT5G09820
18 AT1G29530  --  has similar expression pattern (mutual information value=0.852879) with  --  AT3G22210  --  has similar expression pattern (mutual information value=1.11916) with  --  AT5G38510
19 AT1G29530  --  has similar expression pattern (mutual information value=0.852879) with  --  AT3G22210  --  has similar expression pattern (mutual information value=0.941393) with  --  AT5G44520
20 AT1G29530  --  has similar expression pattern (mutual information value=0.852879) with  --  AT3G22210  --  has similar expression pattern (mutual information value=1.2436) with  --  AT5G58260
21 AT1G29530  --  has similar expression pattern (mutual information value=0.852879) with  --  AT3G22210  --  has similar expression pattern (mutual information value=1.23072) with  --  AT5G62840
22 AT1G29530  --  has similar expression pattern (mutual information value=0.852879) with  --  AT3G22210  --  has similar expression pattern (mutual information value=1.31163) with  --  AT5G27560
23 AT1G29530  --  has similar expression pattern (mutual information value=0.852879) with  --  AT3G22210  --  has similar expression pattern (mutual information value=1.33944) with  --  ARRPS1; RPS1
24 AT1G29530  --  has similar expression pattern (mutual information value=0.852879) with  --  AT3G22210  --  has similar expression pattern (mutual information value=1.18722) with  --  LHCA5
25 AT1G29530  --  has similar expression pattern (mutual information value=0.852879) with  --  AT3G22210  --  has similar expression pattern (mutual information value=1.05245) with  --  SECE1
26 AT1G29530  --  has similar expression pattern (mutual information value=0.852879) with  --  AT3G22210  --  has similar expression pattern (mutual information value=1.29473) with  --  PDE226; PDS; PDS3
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact