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A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AT1G47940
Type: Protein GRN ID: np10526 Name:
Annotation: Pentatricopeptide repeat (PPR) superfamily protein
Gene Locus: AT1G47940
Gene Expression (Affy ATH1 probeset): 257505_at    
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 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
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Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AT1G47940  --  has similar expression pattern (mutual information value=0.800747) with  --  AT1G38149
3 AT1G47940  --  has similar expression pattern (mutual information value=0.800747) with  --  AT1G38340
4 AT1G47940  --  has similar expression pattern (mutual information value=0.800747) with  --  AT1G38149  --  has similar expression pattern (mutual information value=0.968075) with  --  AT1G09550
5 AT1G47940  --  has similar expression pattern (mutual information value=0.800747) with  --  AT1G38149  --  has similar expression pattern (mutual information value=0.895862) with  --  AT2G16410
6 AT1G47940  --  has similar expression pattern (mutual information value=0.800747) with  --  AT1G38149  --  has similar expression pattern (mutual information value=0.928542) with  --  AT3G27590
7 AT1G47940  --  has similar expression pattern (mutual information value=0.800747) with  --  AT1G38149  --  has similar expression pattern (mutual information value=0.809556) with  --  AT3G21410
8 AT1G47940  --  has similar expression pattern (mutual information value=0.800747) with  --  AT1G38149  --  has similar expression pattern (mutual information value=0.922502) with  --  sks10
9 AT1G47940  --  has similar expression pattern (mutual information value=0.800747) with  --  AT1G38149  --  has similar expression pattern (mutual information value=0.901888) with  --  AT3G42820
10 AT1G47940  --  has similar expression pattern (mutual information value=0.800747) with  --  AT1G38149  --  has similar expression pattern (mutual information value=0.846651) with  --  AT5G43800
11 AT1G47940  --  has similar expression pattern (mutual information value=0.800747) with  --  AT1G38149  --  has similar expression pattern (mutual information value=0.809328) with  --  AT5G46310
12 AT1G47940  --  has similar expression pattern (mutual information value=0.800747) with  --  AT1G38149  --  has similar expression pattern (mutual information value=0.827397) with  --  AT5G54350
13 AT1G47940  --  has similar expression pattern (mutual information value=0.800747) with  --  AT1G38149  --  has similar expression pattern (mutual information value=0.836567) with  --  AT5G26640
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