Welcome to HRGRN: A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks

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	Welcome to HRGRN A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks

Location: Home > Details for node AT1G42440

Type: Protein	GRN ID: np10264	Name:
Annotation:	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948), Protein of unknown function DUF663 (InterPro:IPR007034); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G06720.1); Has 2741 Blast hits to 2088 proteins in 291 species: Archae - 2; Bacteria - 131; Metazoa - 833; Fungi - 650; Plants - 171; Viruses - 49; Other Eukaryotes - 905 (source: NCBI BLink).
Gene Locus:	AT1G42440
Gene Expression (Affy ATH1 probeset):	262272_at

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Protein modification

Protein-protein interaction
also include predicted relationship

Compound-protein interaction

TF-target gene regulation

Small RNA-target regulation
also include predicted relationship

Carrier and transported molecule

Catalytic chemical reaction

Co-expressed gene pair
with mutual information value >

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Relationship type:	protein modification catalytic chemical reaction protein-protein interaction compound-protein interaction TF-target gene regulation small RNA-target regulation co-expressed gene pair carrier and transported molecule family/complex and member
Relationship evidence:	Solid line: validated Dashed line: predicted
Relationship direction:	Arrow: positive T shape: negative None arrow: unknown or n/a
Hormone association:	Thicker line: hormone related relationship : hormone related Node
Node type:	Transcription factor or transcriptional regulator Compound Kinase Small regulatory RNA (miRNA & ta-siRNA) Other nodes

No.	Path
2	AT1G42440 -- has similar expression pattern (mutual information value=0.874085) with -- MEE49
3	AT1G42440 -- has similar expression pattern (mutual information value=0.874085) with -- MEE49 -- has similar expression pattern (mutual information value=0.86386) with -- YAO
4	AT1G42440 -- has similar expression pattern (mutual information value=0.874085) with -- MEE49 -- has similar expression pattern (mutual information value=0.888755) with -- AT4G20020
5	AT1G42440 -- has similar expression pattern (mutual information value=0.874085) with -- MEE49 -- has similar expression pattern (mutual information value=0.890643) with -- RPL24; RPL24B; STV1
6	AT1G42440 -- has similar expression pattern (mutual information value=0.874085) with -- MEE49 -- has similar expression pattern (mutual information value=0.875772) with -- ATFBR1; ATFIB1; FBR1; FIB1; SKIP7
7	AT1G42440 -- has similar expression pattern (mutual information value=0.874085) with -- MEE49 -- has similar expression pattern (mutual information value=0.865003) with -- ATVDAC3; VDAC3
8	AT1G42440 -- has similar expression pattern (mutual information value=0.874085) with -- MEE49 -- has similar expression pattern (mutual information value=0.986114) with -- ATEBP1; ATG2; EBP1

	Funding by the National Science Foundation	Funding by the Oklahoma Center for the Advancement of Science & Technology	Additional funding by the Samuel Roberts Noble Foundation

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