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A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node som
Type: Protein GRN ID: np06061 Name: som
Annotation: SOM | Zinc finger C-x8-C-x5-C-x3-H type family protein
Gene Locus: AT1G03790
Transcription factor /
transcriptional regulator:		 transcription factor family C3H
References:
  • Sun TP. Gibberellin-GID1-DELLA: a pivotal regulatory module for plant growth and development. Plant Physiol. 2010 Oct;154(2):567-70. doi: 10.1104/pp.110.161554. PubMed PMID: 20921186; PubMed Central PMCID: PMC2949019.
 
Pathways: Gibberellins 
Gene Expression (Affy ATH1 probeset): 265084_at    
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 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

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Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 som  --  regulates the expression of   --  ATGA3OX2
3 som  --  regulates the expression of   --  ATGA3OX1
4 som  --  regulates the expression of   --  CYP707A2
5 som  --  regulates the expression of   --  ATNCED9
6 som  --  regulates the expression of   --  ATNCED6
7 som  --  regulates the expression of   --  ABA1/ZEP/ZEAXANTHIN OXIDASE
8 som  --  is regulated by  --  pil5
9 som  --  regulates the expression of   --  ATGA3OX2  --  has product (in catalytic reaction)  --  GA1
10 som  --  regulates the expression of   --  ATGA3OX2  --  is a member of  --  ATGA3OX1 family94, coding gene
11 som  --  regulates the expression of   --  ATGA3OX2  --  is regulated by  --  fus3
12 som  --  regulates the expression of   --  ATGA3OX2  --  is the target gene of  --  ath-miR835-5p
13 som  --  regulates the expression of   --  ATGA3OX1  --  interacts with  --  AGF1
14 som  --  regulates the expression of   --  ATGA3OX1  --  is regulated by  --  DAG1/PIL5
15 som  --  regulates the expression of   --  ATGA3OX1  --  is regulated by  --  AG
16 som  --  regulates the expression of   --  CYP707A2  --  interacts with  --  AT1G76185
17 som  --  regulates the expression of   --  CYP707A2  --  interacts with  --  RUS3
18 som  --  regulates the expression of   --  CYP707A2  --  interacts with  --  AtRABH1c; RABH1c
19 som  --  regulates the expression of   --  CYP707A2  --  interacts with  --  AtRABA1c; RABA1c
20 som  --  regulates the expression of   --  CYP707A2  --  interacts with  --  ANNAT1; ATOXY5; OXY5
21 som  --  regulates the expression of   --  CYP707A2  --  interacts with  --  ATCTIMC; CYTOTPI; TPI
22 som  --  regulates the expression of   --  CYP707A2  --  interacts with  --  ATDHAR1; DHAR1; DHAR5
23 som  --  regulates the expression of   --  CYP707A2  --  interacts with  --  ATHS1; HS1
24 som  --  regulates the expression of   --  CYP707A2  --  interacts with  --  ALMT1; ATALMT1
25 som  --  regulates the expression of   --  CYP707A2  --  interacts with  --  AT5G39730
26 som  --  regulates the expression of   --  CYP707A2  --  has product (in catalytic reaction)  --  8'-hydroxy ABA
27 som  --  regulates the expression of   --  CYP707A2  --  is a member of  --  CYP707A1 family43, coding gene
28 som  --  regulates the expression of   --  ATNCED9  --  has product (in catalytic reaction)  --  C25-Epoxy-apo-aldehyde
29 som  --  regulates the expression of   --  ATNCED9  --  has product (in catalytic reaction)  --  12'-apo-Carotenal
30 som  --  regulates the expression of   --  ATNCED9  --  has product (in catalytic reaction)  --  xanthoxin
31 som  --  regulates the expression of   --  ATNCED9  --  is a member of  --  ATNCED3 family40, coding gene
32 som  --  regulates the expression of   --  ABA1/ZEP/ZEAXANTHIN OXIDASE  --  has similar expression pattern (mutual information value=0.865412) with  --  AT2G33250
33 som  --  regulates the expression of   --  ABA1/ZEP/ZEAXANTHIN OXIDASE  --  has similar expression pattern (mutual information value=1.12271) with  --  PGR5-LIKE A
34 som  --  regulates the expression of   --  ABA1/ZEP/ZEAXANTHIN OXIDASE  --  has similar expression pattern (mutual information value=0.811478) with  --  SQE5; SQP1
35 som  --  regulates the expression of   --  ABA1/ZEP/ZEAXANTHIN OXIDASE  --  has similar expression pattern (mutual information value=0.814559) with  --  CIPK20/CIPK15
36 som  --  regulates the expression of   --  ABA1/ZEP/ZEAXANTHIN OXIDASE  --  has similar expression pattern (mutual information value=0.837268) with  --  AT5G50100
37 som  --  regulates the expression of   --  ABA1/ZEP/ZEAXANTHIN OXIDASE  --  has similar expression pattern (mutual information value=0.95417) with  --  AT5G67370
38 som  --  regulates the expression of   --  ABA1/ZEP/ZEAXANTHIN OXIDASE  --  has product (in catalytic reaction)  --  antheraxanthin
39 som  --  regulates the expression of   --  ABA1/ZEP/ZEAXANTHIN OXIDASE  --  has product (in catalytic reaction)  --  Violaxanthin
40 som  --  regulates the expression of   --  ABA1/ZEP/ZEAXANTHIN OXIDASE  --  is regulated by  --  ATMYB44
41 som  --  is regulated by  --  pil5  --  regulates the expression of   --  TED4
42 som  --  is regulated by  --  pil5  --  regulates the expression of   --  FeChII
43 som  --  is regulated by  --  pil5  --  regulates the expression of   --  AS1 family97, transcription factor gene
44 som  --  is regulated by  --  pil5  --  regulates the expression of   --  RGA1
45 som  --  is regulated by  --  pil5  --  regulates the expression of   --  ATGA2OX2
46 som  --  is regulated by  --  pil5  --  regulates the expression of   --  della family, transcription factor gene
47 som  --  is regulated by  --  pil5  --  regulates the expression of   --  psy
48 som  --  is regulated by  --  pil5  --  regulates the expression of   --  ATFC-II; FC-II; FC2
49 som  --  is regulated by  --  pil5  --  regulates the expression of   --  PORC
50 som  --  is regulated by  --  pil5  --  interacts with  --  FBI1; HFR1; REP1; RSF1
51 som  --  is regulated by  --  pil5  --  interacts with  --  PIF5; PIL6
52 som  --  is regulated by  --  pil5  --  interacts with  --  PIF4
53 som  --  is regulated by  --  pil5  --  interacts with  --  PIF3
54 som  --  is regulated by  --  pil5  --  interacts with  --  Phytochrome B (PhyB)
55 som  --  is regulated by  --  pil5  --  interacts with  --  Phytochrome A (PhyA)
56 som  --  is regulated by  --  pil5  --  interacts with  --  phy family, coding gene
57 som  --  is regulated by  --  pil5  --  interacts with  --  AT4G37710
58 som  --  is regulated by  --  pil5  --  interacts with  --  ATDET1; DET1; FUS2
59 som  --  is regulated by  --  pil5  --  interacts with  --  HYH
60 som  --  is regulated by  --  pil5  --  interacts with  --  HY5
61 som  --  is regulated by  --  pil5  --  interacts with  --  FHY3
62 som  --  is regulated by  --  pil5  --  interacts with  --  PIF7
63 som  --  is regulated by  --  pil5  --  interacts with  --  PIF6; PIL2
64 som  --  is regulated by  --  pil5  --  interacts with  --  ABI3
65 som  --  is regulated by  --  pil5  --  interacts with  --  RGL2
66 som  --  is regulated by  --  pil5  --  interacts with  --  APRR1; AtTOC1; PRR1; TOC1
67 som  --  is regulated by  --  pil5  --  is modified by  --  ATCKA2; CKA2
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