Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node VSP1
Type: Protein GRN ID: np05081 Name: VSP1
Annotation: VSP1, ATVSP1 | vegetative storage protein 1
Gene Locus: AT5G24780
Pathways: Ethylene 
Gene Expression (Affy ATH1 probeset): 245928_s_at    
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 VSP1  --  is regulated by  --  ANAC019; NAC019
3 VSP1  --  has similar expression pattern (mutual information value=0.848614) with  --  TSA1
4 VSP1  --  is a member of  --  Family86, transcription factor gene
5 VSP1  --  is regulated by  --  ANAC019; NAC019  --  interacts with  --  TCP8
6 VSP1  --  is regulated by  --  ANAC019; NAC019  --  interacts with  --  ATCIPK14; ATSR1; CIPK14; PKS24; SnRK3.15; SR1
7 VSP1  --  is regulated by  --  ANAC019; NAC019  --  interacts with  --  AT4G23050
8 VSP1  --  is regulated by  --  ANAC019; NAC019  --  interacts with  --  AT3G48510
9 VSP1  --  is regulated by  --  ANAC019; NAC019  --  interacts with  --  ABI5
10 VSP1  --  is regulated by  --  ANAC019; NAC019  --  interacts with  --  CIPK11; PKS5; SIP4; SNRK3.22
11 VSP1  --  is regulated by  --  ANAC019; NAC019  --  interacts with  --  anac032; NAC032
12 VSP1  --  is regulated by  --  ANAC019; NAC019  --  interacts with  --  AT1G10585
13 VSP1  --  is regulated by  --  ANAC019; NAC019  --  interacts with  --  RHA2A
14 VSP1  --  is regulated by  --  ANAC019; NAC019  --  interacts with  --  ATHB29; ZFHD1; ZHD11
15 VSP1  --  is regulated by  --  ANAC019; NAC019  --  interacts with  --  AT-TCP20; ATTCP20; PCF1; TCP20
16 VSP1  --  is regulated by  --  ANAC019; NAC019  --  interacts with  --  AT5G42940
17 VSP1  --  is regulated by  --  ANAC019; NAC019  --  interacts with  --  RHA1A
18 VSP1  --  is regulated by  --  ANAC019; NAC019  --  interacts with  --  RHA2B
19 VSP1  --  is regulated by  --  ANAC019; NAC019  --  interacts with  --  ATCPL1; CPL1; FRY2
20 VSP1  --  has similar expression pattern (mutual information value=0.848614) with  --  TSA1  --  interacts with  --  BRU1; MGO3; TSK
21 VSP1  --  has similar expression pattern (mutual information value=0.848614) with  --  TSA1  --  has similar expression pattern (mutual information value=1.13149) with  --  ATBG1; BGL1; BGLU18
22 VSP1  --  has similar expression pattern (mutual information value=0.848614) with  --  TSA1  --  has similar expression pattern (mutual information value=0.848614) with  --  VSP2
23 VSP1  --  has similar expression pattern (mutual information value=0.848614) with  --  TSA1  --  transport  --  Nickel(2+)
24 VSP1  --  has similar expression pattern (mutual information value=0.848614) with  --  TSA1  --  transport  --  Fe3+
25 VSP1  --  has similar expression pattern (mutual information value=0.848614) with  --  TSA1  --  transport  --  Cu2+
26 VSP1  --  has similar expression pattern (mutual information value=0.848614) with  --  TSA1  --  transport  --  Zinc cation
27 VSP1  --  is a member of  --  Family86, transcription factor gene  --  is regulated by  --  Family85, transcription factor gene
28 VSP1  --  is a member of  --  Family86, transcription factor gene  --  has family member  --  CBF3
29 VSP1  --  is a member of  --  Family86, transcription factor gene  --  has family member  --  CBF2
30 VSP1  --  is a member of  --  Family86, transcription factor gene  --  has family member  --  CBF1
31 VSP1  --  is a member of  --  Family86, transcription factor gene  --  has family member  --  LCR67
32 VSP1  --  is a member of  --  Family86, transcription factor gene  --  has family member  --  VAD1
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact