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Location:  Home > Details for node ATRUB1
Type: Protein GRN ID: np02091 Name: ATRUB1
Annotation: RUB1, NEDD8, ATRUB1 | related to ubiquitin 1
Gene Locus: AT1G31340
References:
  • Bostick M, Lochhead SR, Honda A, Palmer S, Callis J. Related to ubiquitin 1 and 2 are redundant and essential and regulate vegetative growth, auxin signaling, and ethylene production in Arabidopsis. Plant Cell. 2004 Sep;16(9):2418-32. Epub 2004 Aug 19. PubMed PMID: 15319484; PubMed Central PMCID: PMC520943.
 
Pathways: Auxins 
Gene Expression (Affy ATH1 probeset): 262551_at    
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 Protein modification
 Protein-protein interaction
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 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
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 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
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Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 ATRUB1  --  interacts with  --  ATCUL3B; CUL3B
3 ATRUB1  --  interacts with  --  ATCUL3; ATCUL3A; CUL3; CUL3A
4 ATRUB1  --  is a member of  --  RUB2 family32, coding gene
5 ATRUB1  --  interacts with  --  ATCUL3B; CUL3B  --  interacts with  --  ATBPM1; BPM1
6 ATRUB1  --  interacts with  --  ATCUL3B; CUL3B  --  interacts with  --  AT4G08455
7 ATRUB1  --  interacts with  --  ATCUL3B; CUL3B  --  interacts with  --  AT1G21780
8 ATRUB1  --  interacts with  --  ATCUL3B; CUL3B  --  interacts with  --  ABAP1
9 ATRUB1  --  interacts with  --  ATCUL3B; CUL3B  --  interacts with  --  ATBPM3; BPM3
10 ATRUB1  --  interacts with  --  ATCUL3B; CUL3B  --  interacts with  --  ATRBX1
11 ATRUB1  --  interacts with  --  ATCUL3B; CUL3B  --  has similar expression pattern (mutual information value=0.953781) with  --  AT1G54460
12 ATRUB1  --  interacts with  --  ATCUL3B; CUL3B  --  has similar expression pattern (mutual information value=1.09903) with  --  SPT16
13 ATRUB1  --  interacts with  --  ATCUL3B; CUL3B  --  has similar expression pattern (mutual information value=0.806546) with  --  AT5G45190
14 ATRUB1  --  interacts with  --  ATCUL3B; CUL3B  --  has similar expression pattern (mutual information value=0.873723) with  --  AT5G25060
15 ATRUB1  --  interacts with  --  ATCUL3B; CUL3B  --  is a member of  --  CUL3 family, coding gene
16 ATRUB1  --  interacts with  --  ATCUL3; ATCUL3A; CUL3; CUL3A  --  interacts with  --  BT1
17 ATRUB1  --  interacts with  --  ATCUL3; ATCUL3A; CUL3; CUL3A  --  interacts with  --  ATBT2; BT2
18 ATRUB1  --  interacts with  --  ATCUL3; ATCUL3A; CUL3; CUL3A  --  interacts with  --  BT3
19 ATRUB1  --  interacts with  --  ATCUL3; ATCUL3A; CUL3; CUL3A  --  interacts with  --  AT3G43100
20 ATRUB1  --  interacts with  --  ATCUL3; ATCUL3A; CUL3; CUL3A  --  interacts with  --  AT5G48510
21 ATRUB1  --  interacts with  --  ATCUL3; ATCUL3A; CUL3; CUL3A  --  interacts with  --  AT1G01640
22 ATRUB1  --  interacts with  --  ATCUL3; ATCUL3A; CUL3; CUL3A  --  interacts with  --  BT5
23 ATRUB1  --  interacts with  --  ATCUL3; ATCUL3A; CUL3; CUL3A  --  interacts with  --  ATBPM2; BPM2
24 ATRUB1  --  interacts with  --  ATCUL3; ATCUL3A; CUL3; CUL3A  --  interacts with  --  ATEOL1; ETO1
25 ATRUB1  --  interacts with  --  ATCUL3; ATCUL3A; CUL3; CUL3A  --  interacts with  --  ATCSN2; COP12; CSN2; FUS12
26 ATRUB1  --  interacts with  --  ATCUL3; ATCUL3A; CUL3; CUL3A  --  is regulated by  --  ETO family, chromatin remodeling & transcription regulator gene
27 ATRUB1  --  interacts with  --  ATCUL3; ATCUL3A; CUL3; CUL3A  --  has similar expression pattern (mutual information value=0.803532) with  --  VPS35B
28 ATRUB1  --  interacts with  --  ATCUL3; ATCUL3A; CUL3; CUL3A  --  has similar expression pattern (mutual information value=0.817126) with  --  ARF12
29 ATRUB1  --  interacts with  --  ATCUL3; ATCUL3A; CUL3; CUL3A  --  has similar expression pattern (mutual information value=0.859125) with  --  GC6; MAG4
30 ATRUB1  --  interacts with  --  ATCUL3; ATCUL3A; CUL3; CUL3A  --  has similar expression pattern (mutual information value=0.800418) with  --  SKIP2; VFB4
31 ATRUB1  --  is a member of  --  RUB2 family32, coding gene  --  is a member of  --  np2055 complex12
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