Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node spl family, transcription factor gene
Type: Family GRN ID: gf06016 Name: spl family, transcription factor gene
Annotation: transcription factor gene family, members include spl3, spl4, spl5
References:
  • Yamaguchi A, Wu MF, Yang L, Wu G, Poethig RS, Wagner D. The microRNA-regulated SBP-Box transcription factor SPL3 is a direct upstream activator of LEAFY, FRUITFULL, and APETALA1. Dev Cell. 2009 Aug;17(2):268-78. doi: 10.1016/j.devcel.2009.06.007. PubMed PMID: 19686687; PubMed Central PMCID: PMC2908246.
 
Pathways: Gibberellins 
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 spl family, transcription factor gene  --  regulates the expression of   --  LFY
3 spl family, transcription factor gene  --  regulates the expression of   --  ap1
4 spl family, transcription factor gene  --  regulates the expression of   --  ful
5 spl family, transcription factor gene  --  has family member  --  spl5
6 spl family, transcription factor gene  --  has family member  --  spl4
7 spl family, transcription factor gene  --  has family member  --  spl3
8 spl family, transcription factor gene  --  regulates the expression of   --  LFY  --  regulates the expression of   --  CAL
9 spl family, transcription factor gene  --  regulates the expression of   --  LFY  --  regulates the expression of   --  AG
10 spl family, transcription factor gene  --  regulates the expression of   --  LFY  --  is regulated by  --  SOC1
11 spl family, transcription factor gene  --  regulates the expression of   --  LFY  --  is regulated by  --  GAMYB33
12 spl family, transcription factor gene  --  regulates the expression of   --  LFY  --  is regulated by  --  GBF1
13 spl family, transcription factor gene  --  regulates the expression of   --  LFY  --  interacts with  --  CHR3; SYD
14 spl family, transcription factor gene  --  regulates the expression of   --  LFY  --  interacts with  --  MYB17
15 spl family, transcription factor gene  --  regulates the expression of   --  LFY  --  interacts with  --  UFO
16 spl family, transcription factor gene  --  regulates the expression of   --  LFY  --  is modified by  --  CKL6; PAPK1
17 spl family, transcription factor gene  --  regulates the expression of   --  ap1  --  interacts with  --  AGL6
18 spl family, transcription factor gene  --  regulates the expression of   --  ap1  --  interacts with  --  ABS; AGL32; TT16
19 spl family, transcription factor gene  --  regulates the expression of   --  ap1  --  interacts with  --  AGL27; FLM; MAF1
20 spl family, transcription factor gene  --  regulates the expression of   --  ap1  --  interacts with  --  AGL24
21 spl family, transcription factor gene  --  regulates the expression of   --  ap1  --  interacts with  --  AGL22; SVP
22 spl family, transcription factor gene  --  regulates the expression of   --  ap1  --  interacts with  --  PI
23 spl family, transcription factor gene  --  regulates the expression of   --  ap1  --  interacts with  --  AGL9; SEP3
24 spl family, transcription factor gene  --  regulates the expression of   --  ap1  --  interacts with  --  BOP2
25 spl family, transcription factor gene  --  regulates the expression of   --  ap1  --  interacts with  --  BOP1
26 spl family, transcription factor gene  --  regulates the expression of   --  ap1  --  interacts with  --  ATVIT1; VIT1
27 spl family, transcription factor gene  --  regulates the expression of   --  ap1  --  interacts with  --  AGL97
28 spl family, transcription factor gene  --  regulates the expression of   --  ap1  --  interacts with  --  AGL92
29 spl family, transcription factor gene  --  regulates the expression of   --  ap1  --  interacts with  --  AGL86
30 spl family, transcription factor gene  --  regulates the expression of   --  ap1  --  interacts with  --  AT1G48150
31 spl family, transcription factor gene  --  regulates the expression of   --  ap1  --  interacts with  --  AGL39
32 spl family, transcription factor gene  --  regulates the expression of   --  ap1  --  interacts with  --  AGL21
33 spl family, transcription factor gene  --  regulates the expression of   --  ap1  --  interacts with  --  AGL16
34 spl family, transcription factor gene  --  regulates the expression of   --  ap1  --  interacts with  --  AGL15
35 spl family, transcription factor gene  --  regulates the expression of   --  ap1  --  interacts with  --  AGL3; SEP4
36 spl family, transcription factor gene  --  regulates the expression of   --  ap1  --  interacts with  --  AGL2; SEP1
37 spl family, transcription factor gene  --  regulates the expression of   --  ap1  --  interacts with  --  SEU
38 spl family, transcription factor gene  --  regulates the expression of   --  ap1  --  interacts with  --  AP3; ATAP3
39 spl family, transcription factor gene  --  regulates the expression of   --  ap1  --  is regulated by  --  FT?
40 spl family, transcription factor gene  --  regulates the expression of   --  ap1  --  is regulated by  --  SPL8
41 spl family, transcription factor gene  --  regulates the expression of   --  ful  --  interacts with  --  LSU1
42 spl family, transcription factor gene  --  regulates the expression of   --  ful  --  interacts with  --  AT3G09250
43 spl family, transcription factor gene  --  regulates the expression of   --  ful  --  interacts with  --  AGL14
44 spl family, transcription factor gene  --  has family member  --  spl5  --  is the target gene of  --  miR156family, miRNA or ta-siRNA
45 spl family, transcription factor gene  --  has family member  --  spl5  --  is the target gene of  --  ath-miR156j
46 spl family, transcription factor gene  --  has family member  --  spl5  --  is the target gene of  --  ath-miR156i
47 spl family, transcription factor gene  --  has family member  --  spl5  --  is the target gene of  --  ath-miR156h
48 spl family, transcription factor gene  --  has family member  --  spl5  --  is the target gene of  --  ath-miR157d
49 spl family, transcription factor gene  --  has family member  --  spl5  --  is the target gene of  --  ath-miR156f
50 spl family, transcription factor gene  --  has family member  --  spl5  --  is the target gene of  --  ath-miR156e
51 spl family, transcription factor gene  --  has family member  --  spl5  --  is the target gene of  --  ath-miR156d
52 spl family, transcription factor gene  --  has family member  --  spl5  --  is the target gene of  --  ath-miR156c
53 spl family, transcription factor gene  --  has family member  --  spl5  --  is the target gene of  --  ath-miR156b
54 spl family, transcription factor gene  --  has family member  --  spl5  --  is the target gene of  --  ath-miR156a
55 spl family, transcription factor gene  --  has family member  --  spl5  --  is the target gene of  --  ath-miR156g
56 spl family, transcription factor gene  --  has family member  --  spl4  --  interacts with  --  ATCSP3; CSP3
57 spl family, transcription factor gene  --  has family member  --  spl4  --  has similar expression pattern (mutual information value=0.813579) with  --  AT1G23130
58 spl family, transcription factor gene  --  has family member  --  spl4  --  has similar expression pattern (mutual information value=0.808549) with  --  AT5G39030
59 spl family, transcription factor gene  --  has family member  --  spl4  --  is the target gene of  --  ath-miR157c
60 spl family, transcription factor gene  --  has family member  --  spl4  --  is the target gene of  --  ath-miR157b
61 spl family, transcription factor gene  --  has family member  --  spl4  --  is the target gene of  --  ath-miR157a
62 spl family, transcription factor gene  --  has family member  --  spl3  --  is the target gene of  --  ath-miR172b-3p
63 spl family, transcription factor gene  --  has family member  --  spl3  --  is regulated by  --  FD
64 spl family, transcription factor gene  --  has family member  --  spl3  --  interacts with  --  CERK1; LYSM RLK1
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact