Please cite our paper:
Mishra NK, Chang J, Zhao PX(2014). Prediction of membrane transport proteins and their substrate specificities using primary sequence information.
PLoS One.
9(6):e100278.
.
The Zhao Bioinformatics Laboratory
TrSSP: the Transporter Substrate Specificity Prediction Server
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TrSSP
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Datasets
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Help
Location:
TrSSP
TrSSP Input
Upload query protein sequence(s) in
FASTA
format:
[Load demo data]
OR
Paste sequences below (in
FASTA
only):
- Input sequence limit: First two modules (
2000
), Swissprot based (
1000
), Uniref90 based (
280
) / session.
- file / input sequence size limit: 50 Mb.
Your Email Address to notify you the result (optional):
Select prediction module:
Amino Acid composition based SVM
AAindex based
PSSM based (Swissprot)
(slow)
AAindex + PSSM based (Swissprot)
(more accurate; slow)
PSSM based (Uniref90)
(very slow)
AAindex + PSSM based (Uniref90)
(more accurate; very slow)
SVM threshold:
-1.0
-0.9
-0.8
-0.7
-0.6
-0.5
-0.4
-0.3
-0.2
-0.1
0.0
0.1
0.2
0.3
0.4
0.5
0.6
0.7
0.8
0.9
1.0
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