Download whole dataset

Normalized FPKM Data (used for analysis) click HERE

Raw Data (Number of mapped reads per gene per tissue) click HERE

This suite of expression data provides a platform for common bean functional genomics, including:

• PvYL - Fully expanded 2nd trifoliate leaf tissue from plants provided with fertilizer
• PvL5 - Leaf tissue collected 5 days after plants were inoculated with effective rhizoubium
• PvLF - Leaf tissue from fertilized plants collected at the same time of LE and LI
• PvLE - Leaf tissue collected 21 days after plants were inoculated with effective rhizobium
• PvLI - Leaf tissue collected 21 days after plants were inoculated with ineffective rhizobium
• PvYS - All stem internodes above the cotyledon collected at the 2nd trifoliate stage
• PvST - Shoot tip, including the apical meristem, collected at the 2nd trifoliate stage
• PvFY - Young flowers, collected prior to floral emergence
• PvPY - Young pods, collected 1 to 4 days after floral senescence. Samples contain developing embryos at globular stage
• PvPH - Pods approximately 9cm long, associated with seeds at heart stage (pod only)
• PvP1 - Pods between 10 and 11 cm long, associated with stage 1 seeds (pod only)
• PvP2 - Pods between 12 and 13 cm long associated with stage 2 seeds (pod only)
• PvSH - Heart stage seeds, between 3 and 4 mm across and approximately 7 mg
• PvS1 - Stage 1 seeds, between 6 and 7 mm across and approximately 50 mg
• PvS2 - Stage 2 seeds, between 8 and 10 mm across and between 140 and 150 mg
• PvRT - Root tips, 0.5 cm of tissue, collected from fertilized plants at 2nd trifoliate stage of development.
• PvYR - Whole roots, including root tips, collected at the 2nd trifoliate stage of development
• PvR5 - Whole roots separated from 5 day old pre-fixing nodules
• PvRF - Whole roots from fertilized plants collected at the same time as RE and RI
• PvRE - Whole roots separated from fix+ nodules collected 21 days after inoculation
• PvRI - Whole roots separated from fix- nodules collected 21 days after inoculation
• PvN5 - Pre-fixing (effective) nodules collected 5 days after inoculation
• PvNE - Effectively fixing nodules collected 21 days after inoculation
• PvNI - Ineffectively fixing nodules collected 21 days after inoculation