• Detail of Experiment mapped on Phaseolus Vulgaris JGI
NameRNA-seq analysis of Phaseolus vulgaris cv. Negro jamapa
DescriptionWe present the Phaseolus vulgaris cv. Negro jamapa expression profiles for all predicted genes in the P. vulgaris reference genome (G 19833) for 24 unique samples from seven distinct tissues; roots, nodules, stems, flowers, leaves, pods, and seeds throughout development. We identified genes differentially expressed between distinct tissues and between samples from the same tissue collected at different time points. We have also identified sequences uniquely expressed in each sample and in each tissue. Genes with stable expression patterns, to be used as housekeeping sequences in future experiments, were also identified. We utilized the expression profiles of all predicted genes in Phaseolus vulgaris to examine the biological processes related to seed and pod development, nodulation and symbiosis, and changes in gene expression due to nitrogen availability.
ContactUSDA-ARS, UNIVERSITY OF MINNESOTA
Reference
Conditions24
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Conditions/Treatments

Name Experiment Genotype Mutation Stage Tissue/organ Treatment Level Time Samples/replicates Xref
PvYL RNA-seq analysis of Phaseolus vulgaris cv. Negro jamapa Negro jamapa Leaf Young Leaf NO3- Fertilizer
  • PvYL_1
PvL5 RNA-seq analysis of Phaseolus vulgaris cv. Negro jamapa Negro jamapa Leaf fix+ Rhizobium tropici 899 5 DAI
  • PvL5_1
PvLF RNA-seq analysis of Phaseolus vulgaris cv. Negro jamapa Negro jamapa Leaf NO3- Fertilizer 21 DAI
  • PvLF_1
PvLE RNA-seq analysis of Phaseolus vulgaris cv. Negro jamapa Negro jamapa Leaf fix+ Rhizobium tropici 899 21 DAI
  • PvLE_1
PvLI RNA-seq analysis of Phaseolus vulgaris cv. Negro jamapa Negro jamapa Leaf fix- Rhizobium giardini 6917 21 DAI
  • PvLI_1
PvYS RNA-seq analysis of Phaseolus vulgaris cv. Negro jamapa Negro jamapa Stem NO3- Fertilizer
  • PvYS_1
PvST RNA-seq analysis of Phaseolus vulgaris cv. Negro jamapa Negro jamapa Shoot NO3- Fertilizer
  • PvST_1
PvYF RNA-seq analysis of Phaseolus vulgaris cv. Negro jamapa Negro jamapa Flower NO3- Fertilizer
  • PvYF_1
PvPY RNA-seq analysis of Phaseolus vulgaris cv. Negro jamapa Negro jamapa Pod Young Pod NO3- Fertilizer
  • PvPY_1
PvPH RNA-seq analysis of Phaseolus vulgaris cv. Negro jamapa Negro jamapa Pod 9cm Pod NO3- Fertilizer
  • PvPH_1
PvP1 RNA-seq analysis of Phaseolus vulgaris cv. Negro jamapa Negro jamapa Pod 10cm Pod NO3- Fertilizer
  • PvP1_1
PvP2 RNA-seq analysis of Phaseolus vulgaris cv. Negro jamapa Negro jamapa Pod 12 cm Pod NO3- Fertilizer
  • PvP2_1
PvSH RNA-seq analysis of Phaseolus vulgaris cv. Negro jamapa Negro jamapa Seed 7mg Seed NO3- Fertilizer
  • PvSH_1
PvS1 RNA-seq analysis of Phaseolus vulgaris cv. Negro jamapa Negro jamapa Seed 50mg Seed NO3- Fertilizer
  • PvS1_1
PvS2 RNA-seq analysis of Phaseolus vulgaris cv. Negro jamapa Negro jamapa Seed 140mg Seed NO3- Fertilizer
  • PvS2_1
PvRT RNA-seq analysis of Phaseolus vulgaris cv. Negro jamapa Negro jamapa Root Tip Root NO3- Fertilizer
  • PvRT_1
PvYR RNA-seq analysis of Phaseolus vulgaris cv. Negro jamapa Negro jamapa Root Young Root NO3- Fertilizer
  • PvYR_1
PvR5 RNA-seq analysis of Phaseolus vulgaris cv. Negro jamapa Negro jamapa Root fix+ Rhizobium tropici 899 5 DAI
  • PvR5_1
PvRF RNA-seq analysis of Phaseolus vulgaris cv. Negro jamapa Negro jamapa Root NO3- Fertilizer 21 DAI
  • PvRF_1
PvRE RNA-seq analysis of Phaseolus vulgaris cv. Negro jamapa Negro jamapa Root fix+ Rhizobium tropici 899 21 DAI
  • PvRE_1
PvRI RNA-seq analysis of Phaseolus vulgaris cv. Negro jamapa Negro jamapa Root fix- Rhizobium giardini 6917 21 DAI
  • PvRI_1
PvN5 RNA-seq analysis of Phaseolus vulgaris cv. Negro jamapa Negro jamapa Nodule fix+ Rhizobium tropici 899 5 DAI
  • PvN5_1
PvNE RNA-seq analysis of Phaseolus vulgaris cv. Negro jamapa Negro jamapa Nodule fix+ Rhizobium tropici 899 21 DAI
  • PvNE_1
PvNI RNA-seq analysis of Phaseolus vulgaris cv. Negro jamapa Negro jamapa Nodule fix- Rhizobium giardini 6917 21 DAI
  • PvNI_1