Co-expression Analysis
Co-expression Modules over selected samples
Module ID Number of genes Enriched GO terms (Term/Q-value/Description) Enriched KEGG pathway (Term/Q-value/Description)
Module #1 183 Details
Molecular Function:
GO:0003735  1.34E-159  structural constituent of ribosome
GO:0005198  5.70E-148  structural molecule activity
GO:0008135  2.29E-08  translation factor activity, RNA binding
GO:0045182  2.29E-08  translation regulator activity
GO:0090079  2.29E-08  translation regulator activity, nucleic acid binding
GO:0019843  3.16E-07  rRNA binding
GO:0003746  1.03E-04  translation elongation factor activity
GO:0003743  1.13E-03  translation initiation factor activity
GO:0043022  2.61E-02  ribosome binding
Biological Process:
GO:0006412  1.47E-152  translation
GO:0043043  3.35E-152  peptide biosynthetic process
GO:0071826  7.14E-07  ribonucleoprotein complex subunit organization
GO:0022618  7.14E-07  ribonucleoprotein complex assembly
GO:0001732  7.23E-07  formation of cytoplasmic translation initiation complex
GO:0002183  7.23E-07  cytoplasmic translational initiation
GO:0006413  2.03E-06  translational initiation
GO:0022613  1.09E-05  ribonucleoprotein complex biogenesis
GO:0006414  1.17E-04  translational elongation
GO:0034622  3.91E-02  cellular protein-containing complex assembly
Cellular Component:
GO:0005840  1.37E-158  ribosome
GO:0044391  2.49E-37  ribosomal subunit
GO:0015935  4.08E-19  small ribosomal subunit
GO:0015934  3.57E-17  large ribosomal subunit
GO:0070993  2.61E-08  translation preinitiation complex
GO:0016282  2.61E-08  eukaryotic 43S preinitiation complex
GO:0033290  2.61E-08  eukaryotic 48S preinitiation complex
GO:0005852  3.10E-08  eukaryotic translation initiation factor 3 complex
GO:0022626  3.10E-08  cytosolic ribosome
GO:0044445  1.09E-06  cytosolic part
GO:0022627  5.64E-06  cytosolic small ribosomal subunit
GO:0022625  3.45E-04  cytosolic large ribosomal subunit
GO:0005853  1.91E-02  eukaryotic translation elongation factor 1 complex
Details
03010  1.44E-133  Ribosome
03013  4.39E-03  RNA transport
Module #2 155 Details
Molecular Function:
GO:0003735  8.48E-21  structural constituent of ribosome
GO:0005198  1.38E-18  structural molecule activity
GO:0016168  1.70E-15  chlorophyll binding
GO:0046906  3.01E-04  tetrapyrrole binding
GO:0016984  3.30E-04  ribulose-bisphosphate carboxylase activity
GO:0016851  7.16E-04  magnesium chelatase activity
GO:0051002  7.16E-04  ligase activity, forming nitrogen-metal bonds
GO:0051003  7.16E-04  ligase activity, forming nitrogen-metal bonds, forming coordination complexes
GO:0004813  1.78E-02  alanine-tRNA ligase activity
Biological Process:
GO:0015979  2.93E-34  photosynthesis
GO:0006412  7.20E-16  translation
GO:0043043  7.20E-16  peptide biosynthetic process
GO:0019684  1.65E-14  photosynthesis, light reaction
GO:0009765  5.42E-12  photosynthesis, light harvesting
GO:0006091  6.91E-10  generation of precursor metabolites and energy
GO:0015995  1.68E-08  chlorophyll biosynthetic process
GO:0033014  9.70E-08  tetrapyrrole biosynthetic process
GO:0015994  3.71E-07  chlorophyll metabolic process
GO:0033013  4.48E-07  tetrapyrrole metabolic process
GO:0006779  4.48E-07  porphyrin-containing compound biosynthetic process
GO:0006778  2.77E-06  porphyrin-containing compound metabolic process
GO:0046148  5.67E-06  pigment biosynthetic process
GO:0042440  1.82E-05  pigment metabolic process
GO:0009853  3.50E-04  photorespiration
GO:0051188  4.48E-04  cofactor biosynthetic process
GO:0010207  1.21E-02  photosystem II assembly
GO:0015977  1.51E-02  carbon fixation
GO:0036211  2.54E-02  protein modification process
GO:0006464  2.54E-02  cellular protein modification process
GO:0046390  4.26E-02  ribose phosphate biosynthetic process
GO:0072522  4.27E-02  purine-containing compound biosynthetic process
Cellular Component:
GO:0009579  9.13E-35  thylakoid
GO:0044436  3.65E-30  thylakoid part
GO:0034357  2.03E-29  photosynthetic membrane
GO:0009521  1.98E-26  photosystem
GO:0044434  3.61E-22  chloroplast part
GO:0044435  8.28E-22  plastid part
GO:0009523  1.50E-21  photosystem II
GO:0005840  1.43E-20  ribosome
GO:0042651  1.43E-20  thylakoid membrane
GO:0009522  2.33E-18  photosystem I
GO:0031976  3.09E-17  plastid thylakoid
GO:0009534  3.09E-17  chloroplast thylakoid
GO:0098796  4.74E-17  membrane protein complex
GO:0055035  7.00E-16  plastid thylakoid membrane
GO:0009535  7.00E-16  chloroplast thylakoid membrane
GO:0031984  7.60E-15  organelle subcompartment
GO:0009570  9.96E-10  chloroplast stroma
GO:0009532  2.09E-09  plastid stroma
GO:0009941  1.61E-08  chloroplast envelope
GO:0009526  1.97E-08  plastid envelope
GO:0031975  9.77E-05  envelope
GO:0031967  9.77E-05  organelle envelope
GO:0009538  1.67E-04  photosystem I reaction center
GO:0009654  5.91E-04  photosystem II oxygen evolving complex
GO:0044391  7.50E-04  ribosomal subunit
GO:1990204  1.17E-02  oxidoreductase complex
GO:0015934  4.63E-02  large ribosomal subunit
Details
00195  1.04E-17  Photosynthesis
03010  1.12E-12  Ribosome
00196  7.72E-12  Photosynthesis - antenna proteins
00860  2.38E-05  Porphyrin and chlorophyll metabolism
00710  6.84E-03  Carbon fixation in photosynthetic organisms
00630  4.69E-02  Glyoxylate and dicarboxylate metabolism
Module #3 150 Details
Molecular Function:
GO:0051082  1.20E-05  unfolded protein binding
GO:0005198  8.26E-03  structural molecule activity
GO:0030515  1.23E-02  snoRNA binding
GO:0008565  1.23E-02  protein transporter activity
GO:0003743  2.73E-02  translation initiation factor activity
GO:0140097  2.73E-02  catalytic activity, acting on DNA
GO:0008135  3.03E-02  translation factor activity, RNA binding
GO:0045182  3.03E-02  translation regulator activity
GO:0090079  3.03E-02  translation regulator activity, nucleic acid binding
GO:0003735  3.03E-02  structural constituent of ribosome
GO:0031369  3.03E-02  translation initiation factor binding
GO:0016875  3.94E-02  ligase activity, forming carbon-oxygen bonds
GO:0004812  3.94E-02  aminoacyl-tRNA ligase activity
GO:0003678  4.84E-02  DNA helicase activity
Biological Process:
GO:0006270  1.58E-09  DNA replication initiation
GO:0022613  1.08E-08  ribonucleoprotein complex biogenesis
GO:0006457  2.65E-06  protein folding
GO:0006260  6.07E-06  DNA replication
GO:0006412  3.39E-05  translation
GO:0006364  3.39E-05  rRNA processing
GO:0043043  3.40E-05  peptide biosynthetic process
GO:0001732  8.16E-05  formation of cytoplasmic translation initiation complex
GO:0002183  8.16E-05  cytoplasmic translational initiation
GO:0042254  1.21E-04  ribosome biogenesis
GO:0006413  1.48E-04  translational initiation
GO:0022618  2.83E-04  ribonucleoprotein complex assembly
GO:0071826  2.89E-04  ribonucleoprotein complex subunit organization
GO:0006396  4.72E-03  RNA processing
GO:0000470  1.30E-02  maturation of LSU-rRNA
GO:0034622  1.76E-02  cellular protein-containing complex assembly
GO:0006259  2.53E-02  DNA metabolic process
GO:0065003  2.74E-02  protein-containing complex assembly
GO:0009451  3.97E-02  RNA modification
GO:0043933  4.33E-02  protein-containing complex subunit organization
Cellular Component:
GO:0042555  2.62E-11  MCM complex
GO:0070993  1.02E-05  translation preinitiation complex
GO:0033290  1.02E-05  eukaryotic 48S preinitiation complex
GO:0005852  1.02E-05  eukaryotic translation initiation factor 3 complex
GO:0016282  1.02E-05  eukaryotic 43S preinitiation complex
GO:0005730  1.02E-05  nucleolus
GO:0044428  2.17E-04  nuclear part
GO:0030684  4.20E-04  preribosome
GO:0031974  6.29E-04  membrane-enclosed lumen
GO:0043233  6.29E-04  organelle lumen
GO:0070013  6.29E-04  intracellular organelle lumen
GO:0005732  7.36E-04  small nucleolar ribonucleoprotein complex
GO:0005840  9.16E-04  ribosome
GO:0031981  1.13E-03  nuclear lumen
GO:0005829  1.51E-03  cytosol
GO:0032993  2.63E-03  protein-DNA complex
GO:0031428  5.94E-03  box C/D snoRNP complex
GO:0044452  6.32E-03  nucleolar part
GO:0000786  1.90E-02  nucleosome
GO:0044815  2.13E-02  DNA packaging complex
Details
03008  3.15E-05  Ribosome biogenesis in eukaryotes
03030  4.02E-05  DNA replication
03013  3.49E-03  RNA transport
Module #4 134 Details
Molecular Function:
GO:0070003  8.39E-11  threonine-type peptidase activity
GO:0004175  1.76E-03  endopeptidase activity
GO:0004634  3.65E-02  phosphopyruvate hydratase activity
Biological Process:
GO:0030163  9.27E-09  protein catabolic process
GO:1901565  9.27E-09  organonitrogen compound catabolic process
GO:0006508  8.41E-06  proteolysis
GO:0009057  8.41E-06  macromolecule catabolic process
GO:0051603  2.60E-05  proteolysis involved in cellular protein catabolic process
GO:0044257  2.60E-05  cellular protein catabolic process
GO:0044265  4.89E-04  cellular macromolecule catabolic process
GO:0046034  1.39E-03  ATP metabolic process
GO:0019693  2.51E-03  ribose phosphate metabolic process
GO:0055086  4.26E-03  nucleobase-containing small molecule metabolic process
GO:0009259  4.26E-03  ribonucleotide metabolic process
GO:0009132  4.26E-03  nucleoside diphosphate metabolic process
GO:0046907  4.26E-03  intracellular transport
GO:0009117  4.26E-03  nucleotide metabolic process
GO:0006163  4.26E-03  purine nucleotide metabolic process
GO:0051641  4.26E-03  cellular localization
GO:0009141  4.26E-03  nucleoside triphosphate metabolic process
GO:0006757  4.26E-03  ATP generation from ADP
GO:0042886  4.26E-03  amide transport
GO:0006096  4.26E-03  glycolytic process
GO:0015833  4.26E-03  peptide transport
GO:0045184  4.26E-03  establishment of protein localization
GO:0015031  4.26E-03  protein transport
GO:0006754  4.26E-03  ATP biosynthetic process
GO:0008104  4.26E-03  protein localization
GO:0006605  4.29E-03  protein targeting
GO:0071705  4.40E-03  nitrogen compound transport
GO:0046390  4.40E-03  ribose phosphate biosynthetic process
GO:0006753  4.40E-03  nucleoside phosphate metabolic process
GO:0072522  4.40E-03  purine-containing compound biosynthetic process
GO:0072521  4.40E-03  purine-containing compound metabolic process
GO:0006886  4.65E-03  intracellular protein transport
GO:0019362  5.48E-03  pyridine nucleotide metabolic process
GO:0051649  5.48E-03  establishment of localization in cell
GO:0006612  5.52E-03  protein targeting to membrane
GO:0072524  6.42E-03  pyridine-containing compound metabolic process
GO:0072599  6.42E-03  establishment of protein localization to endoplasmic reticulum
GO:1901292  6.65E-03  nucleoside phosphate catabolic process
GO:0034613  6.88E-03  cellular protein localization
GO:0070727  7.24E-03  cellular macromolecule localization
GO:0006733  8.82E-03  oxidoreduction coenzyme metabolic process
GO:0016310  9.11E-03  phosphorylation
GO:0072525  1.25E-02  pyridine-containing compound biosynthetic process
GO:1901293  1.25E-02  nucleoside phosphate biosynthetic process
GO:0046434  1.31E-02  organophosphate catabolic process
GO:0072657  1.34E-02  protein localization to membrane
GO:0090150  1.34E-02  establishment of protein localization to membrane
GO:0033036  1.46E-02  macromolecule localization
GO:0034404  2.39E-02  nucleobase-containing small molecule biosynthetic process
GO:0006546  2.71E-02  glycine catabolic process
GO:0006732  2.92E-02  coenzyme metabolic process
GO:0042135  3.46E-02  neurotransmitter catabolic process
GO:0009108  3.47E-02  coenzyme biosynthetic process
GO:0072594  4.04E-02  establishment of protein localization to organelle
GO:0042176  4.14E-02  regulation of protein catabolic process
GO:0016052  4.14E-02  carbohydrate catabolic process
GO:0043632  4.18E-02  modification-dependent macromolecule catabolic process
GO:1901135  4.26E-02  carbohydrate derivative metabolic process
Cellular Component:
GO:1905369  1.88E-18  endopeptidase complex
GO:1905368  1.88E-18  peptidase complex
GO:0000502  1.88E-18  proteasome complex
GO:0005839  3.24E-11  proteasome core complex
GO:1902494  1.44E-08  catalytic complex
GO:0019773  1.95E-05  proteasome core complex, alpha-subunit complex
GO:0044432  1.42E-04  endoplasmic reticulum part
GO:0005789  1.42E-04  endoplasmic reticulum membrane
GO:0042175  1.42E-04  nuclear outer membrane-endoplasmic reticulum membrane network
GO:0022624  2.97E-04  proteasome accessory complex
GO:0005838  2.97E-04  proteasome regulatory particle
GO:0005783  7.34E-04  endoplasmic reticulum
GO:0005739  1.11E-03  mitochondrion
GO:0005740  3.74E-03  mitochondrial envelope
GO:0000015  6.19E-03  phosphopyruvate hydratase complex
GO:0044429  8.49E-03  mitochondrial part
GO:0005742  8.56E-03  mitochondrial outer membrane translocase complex
GO:0098799  8.56E-03  outer mitochondrial membrane protein complex
GO:0005786  1.21E-02  signal recognition particle, endoplasmic reticulum targeting
GO:0031967  1.22E-02  organelle envelope
GO:0031975  1.22E-02  envelope
GO:0098796  1.29E-02  membrane protein complex
GO:0031966  1.39E-02  mitochondrial membrane
GO:0031090  1.46E-02  organelle membrane
GO:0044445  1.66E-02  cytosolic part
GO:0048500  3.18E-02  signal recognition particle
GO:0098798  4.41E-02  mitochondrial protein complex
Details
03050  1.91E-23  Proteasome
03060  2.61E-02  Protein export
Module #5 126 Details
Details
00250  2.87E-02  Alanine, aspartate and glutamate metabolism
Module #6 126 Details
Details
Module #7 118 Details
Details
Module #8 117 Details
Details
Module #9 116 Details
Molecular Function:
GO:0004707  3.13E-04  MAP kinase activity
Biological Process:
GO:0090421  1.09E-03  embryonic meristem initiation
GO:0010014  3.04E-03  meristem initiation
GO:0048532  7.63E-03  anatomical structure arrangement
GO:0009933  7.63E-03  meristem structural organization
GO:0009611  9.02E-03  response to wounding
GO:0040011  3.69E-02  locomotion
GO:0001708  3.69E-02  cell fate specification
GO:0009790  4.41E-02  embryo development
GO:0045165  4.41E-02  cell fate commitment
Details
Module #10 116 Details
Biological Process:
GO:0070727  3.12E-02  cellular macromolecule localization
GO:0042886  3.12E-02  amide transport
GO:0045184  3.12E-02  establishment of protein localization
GO:0015031  3.12E-02  protein transport
GO:0008104  3.12E-02  protein localization
GO:0015833  3.12E-02  peptide transport
GO:0071705  3.12E-02  nitrogen compound transport
GO:0006886  3.12E-02  intracellular protein transport
GO:0051649  3.12E-02  establishment of localization in cell
GO:0051641  3.12E-02  cellular localization
GO:0046907  3.12E-02  intracellular transport
GO:0034613  3.12E-02  cellular protein localization
Details
00480  2.30E-02  Glutathione metabolism
Module #11 112 Details
Molecular Function:
GO:0005200  5.00E-02  structural constituent of cytoskeleton
Details
03040  1.12E-02  Spliceosome
04145  8.43E-02  Phagosome
Module #12 111 Details
Biological Process:
GO:0017144  2.06E-02  drug metabolic process
Details
00920  8.55E-02  Sulfur metabolism
00270  8.55E-02  Cysteine and methionine metabolism
Module #13 106 Details
Details
Module #14 103 Details
Molecular Function:
GO:0050136  2.09E-20  NADH dehydrogenase (quinone) activity
GO:0003954  4.81E-20  NADH dehydrogenase activity
GO:0016655  3.38E-18  oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
GO:0016651  2.64E-16  oxidoreductase activity, acting on NAD(P)H
GO:0015077  1.77E-09  monovalent inorganic cation transmembrane transporter activity
GO:0009055  5.48E-08  electron transfer activity
GO:0022890  1.73E-07  inorganic cation transmembrane transporter activity
GO:0008324  4.46E-07  cation transmembrane transporter activity
GO:0015318  3.45E-06  inorganic molecular entity transmembrane transporter activity
GO:0015075  5.79E-06  ion transmembrane transporter activity
GO:0051536  6.90E-05  iron-sulfur cluster binding
GO:0051540  6.90E-05  metal cluster binding
GO:0019829  1.39E-04  cation-transporting ATPase activity
GO:0042625  1.39E-04  ATPase coupled ion transmembrane transporter activity
GO:0022853  1.39E-04  active ion transmembrane transporter activity
GO:0016877  1.87E-03  ligase activity, forming carbon-sulfur bonds
GO:0004129  2.21E-03  cytochrome-c oxidase activity
GO:0016675  2.21E-03  oxidoreductase activity, acting on a heme group of donors
GO:0016681  2.21E-03  oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor
GO:0016676  2.21E-03  oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
GO:0008121  2.21E-03  ubiquinol-cytochrome-c reductase activity
GO:0015002  2.21E-03  heme-copper terminal oxidase activity
GO:0016878  4.83E-03  acid-thiol ligase activity
GO:0015405  4.83E-03  P-P-bond-hydrolysis-driven transmembrane transporter activity
GO:0015399  4.83E-03  primary active transmembrane transporter activity
GO:0051539  1.02E-02  4 iron, 4 sulfur cluster binding
GO:1901681  4.95E-02  sulfur compound binding
Biological Process:
GO:0046034  1.75E-14  ATP metabolic process
GO:0009141  5.08E-13  nucleoside triphosphate metabolic process
GO:0006163  1.49E-11  purine nucleotide metabolic process
GO:0009259  2.77E-11  ribonucleotide metabolic process
GO:0072521  7.68E-11  purine-containing compound metabolic process
GO:0019693  1.01E-10  ribose phosphate metabolic process
GO:0045333  1.01E-10  cellular respiration
GO:0015980  3.87E-10  energy derivation by oxidation of organic compounds
GO:0006091  3.87E-10  generation of precursor metabolites and energy
GO:0017144  4.51E-10  drug metabolic process
GO:0009117  8.41E-10  nucleotide metabolic process
GO:0034220  9.43E-10  ion transmembrane transport
GO:0006753  1.01E-09  nucleoside phosphate metabolic process
GO:0006754  2.02E-09  ATP biosynthetic process
GO:0055086  1.01E-08  nucleobase-containing small molecule metabolic process
GO:0055114  2.11E-08  oxidation-reduction process
GO:0022904  3.84E-07  respiratory electron transport chain
GO:0046390  3.84E-07  ribose phosphate biosynthetic process
GO:0019637  3.84E-07  organophosphate metabolic process
GO:0072522  3.84E-07  purine-containing compound biosynthetic process
GO:0006796  1.08E-06  phosphate-containing compound metabolic process
GO:0006793  1.11E-06  phosphorus metabolic process
GO:1901135  1.11E-06  carbohydrate derivative metabolic process
GO:0022900  1.74E-06  electron transport chain
GO:1901293  2.29E-06  nucleoside phosphate biosynthetic process
GO:0006812  3.18E-06  cation transport
GO:0042773  4.41E-06  ATP synthesis coupled electron transport
GO:0006119  4.41E-06  oxidative phosphorylation
GO:0006811  1.50E-05  ion transport
GO:0055085  2.16E-05  transmembrane transport
GO:0016310  2.92E-05  phosphorylation
GO:0090407  5.23E-05  organophosphate biosynthetic process
GO:1901137  2.23E-04  carbohydrate derivative biosynthetic process
GO:0006101  3.11E-04  citrate metabolic process
GO:0006099  3.11E-04  tricarboxylic acid cycle
GO:0009060  3.82E-04  aerobic respiration
GO:0090662  6.60E-03  ATP hydrolysis coupled transmembrane transport
Cellular Component:
GO:0005743  4.34E-33  mitochondrial inner membrane
GO:0019866  2.79E-31  organelle inner membrane
GO:0070469  6.05E-30  respirasome
GO:0031966  6.05E-30  mitochondrial membrane
GO:0005740  3.14E-29  mitochondrial envelope
GO:0044429  3.41E-29  mitochondrial part
GO:0005739  3.88E-27  mitochondrion
GO:0098800  1.31E-24  inner mitochondrial membrane protein complex
GO:0044455  4.77E-23  mitochondrial membrane part
GO:0098798  5.55E-23  mitochondrial protein complex
GO:0031967  2.24E-20  organelle envelope
GO:0031975  2.24E-20  envelope
GO:0005746  2.88E-20  mitochondrial respirasome
GO:0031090  4.64E-19  organelle membrane
GO:0098803  1.58E-18  respiratory chain complex
GO:0098796  1.29E-17  membrane protein complex
GO:0016469  8.05E-13  proton-transporting two-sector ATPase complex
GO:1990204  5.22E-11  oxidoreductase complex
GO:0045259  9.61E-11  proton-transporting ATP synthase complex
GO:0005753  5.33E-09  mitochondrial proton-transporting ATP synthase complex
GO:0033178  6.65E-09  proton-transporting two-sector ATPase complex, catalytic domain
GO:0045271  8.85E-09  respiratory chain complex I
GO:0005747  8.85E-09  mitochondrial respiratory chain complex I
GO:0030964  8.85E-09  NADH dehydrogenase complex
GO:0045261  2.65E-07  proton-transporting ATP synthase complex, catalytic core F(1)
GO:0070069  1.60E-05  cytochrome complex
GO:1902494  6.00E-04  catalytic complex
GO:0045283  1.69E-03  fumarate reductase complex
GO:0045257  1.69E-03  succinate dehydrogenase complex (ubiquinone)
GO:0045273  1.69E-03  respiratory chain complex II
GO:0045281  1.69E-03  succinate dehydrogenase complex
GO:0005749  1.69E-03  mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)
GO:0000276  2.64E-03  mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
GO:0033177  2.64E-03  proton-transporting two-sector ATPase complex, proton-transporting domain
GO:0045263  1.66E-02  proton-transporting ATP synthase complex, coupling factor F(o)
Details
00190  3.29E-44  Oxidative phosphorylation
00020  2.24E-04  Citrate cycle (TCA cycle)
Module #15 102 Details
Biological Process:
GO:0006730  6.40E-03  one-carbon metabolic process
Details
00520  5.08E-04  Amino sugar and nucleotide sugar metabolism
00053  3.68E-02  Ascorbate and aldarate metabolism
Module #16 101 Details
Biological Process:
GO:0002376  1.53E-02  immune system process
GO:0006955  1.53E-02  immune response
Details
Module #17 98 Details
Molecular Function:
GO:0003714  7.46E-06  transcription corepressor activity
GO:0003712  4.51E-04  transcription coregulator activity
GO:0046527  9.81E-04  glucosyltransferase activity
GO:0016758  3.04E-02  transferase activity, transferring hexosyl groups
Biological Process:
GO:2000022  7.71E-06  regulation of jasmonic acid mediated signaling pathway
GO:0031347  3.27E-04  regulation of defense response
GO:0009611  3.27E-04  response to wounding
GO:0080134  7.82E-04  regulation of response to stress
GO:0044262  1.06E-03  cellular carbohydrate metabolic process
GO:0042546  3.42E-03  cell wall biogenesis
GO:0009890  3.53E-03  negative regulation of biosynthetic process
GO:0010646  4.36E-03  regulation of cell communication
GO:0006073  4.36E-03  cellular glucan metabolic process
GO:0023051  4.36E-03  regulation of signaling
GO:0009966  4.36E-03  regulation of signal transduction
GO:0044042  4.36E-03  glucan metabolic process
GO:0051172  4.38E-03  negative regulation of nitrogen compound metabolic process
GO:0031324  5.72E-03  negative regulation of cellular metabolic process
GO:0044264  5.85E-03  cellular polysaccharide metabolic process
GO:0048583  5.85E-03  regulation of response to stimulus
GO:0010410  6.83E-03  hemicellulose metabolic process
GO:0010383  6.90E-03  cell wall polysaccharide metabolic process
GO:0044036  1.87E-02  cell wall macromolecule metabolic process
GO:0048523  3.12E-02  negative regulation of cellular process
Details
04075  5.67E-04  Plant hormone signal transduction
04016  1.34E-02  MAPK signaling pathway - plant
Module #18 96 Details
Molecular Function:
GO:0008194  2.49E-02  UDP-glycosyltransferase activity
Cellular Component:
GO:0005886  1.27E-02  plasma membrane
Details
00940  8.68E-02  Phenylpropanoid biosynthesis
00945  8.68E-02  Stilbenoid, diarylheptanoid and gingerol biosynthesis
Module #19 95 Details
Molecular Function:
GO:0003735  3.09E-63  structural constituent of ribosome
GO:0005198  9.68E-59  structural molecule activity
GO:0070003  2.81E-02  threonine-type peptidase activity
Biological Process:
GO:0006412  1.29E-48  translation
GO:0043043  1.29E-48  peptide biosynthetic process
Cellular Component:
GO:0005840  6.65E-62  ribosome
GO:0044391  9.36E-11  ribosomal subunit
GO:0015935  4.65E-07  small ribosomal subunit
GO:0005854  5.78E-05  nascent polypeptide-associated complex
GO:0015934  3.42E-03  large ribosomal subunit
GO:0005839  1.20E-02  proteasome core complex
Details
03010  3.38E-53  Ribosome
Module #20 89 Details
Details
Module #21 88 Details
Details
Module #22 87 Details
Molecular Function:
GO:0008017  1.75E-11  microtubule binding
GO:0015631  2.25E-11  tubulin binding
GO:0008092  1.33E-09  cytoskeletal protein binding
Biological Process:
GO:0007018  9.22E-10  microtubule-based movement
GO:0006928  9.22E-10  movement of cell or subcellular component
GO:0007017  5.03E-09  microtubule-based process
Cellular Component:
GO:0005911  2.99E-02  cell-cell junction
GO:0009506  2.99E-02  plasmodesma
GO:0055044  2.99E-02  symplast
GO:0030054  2.99E-02  cell junction
GO:0070603  4.57E-02  SWI/SNF superfamily-type complex
GO:0005886  4.57E-02  plasma membrane
GO:0009524  4.57E-02  phragmoplast
GO:1904949  4.57E-02  ATPase complex
GO:0000790  4.67E-02  nuclear chromatin
Details
Module #23 86 Details
Details
03040  1.96E-02  Spliceosome
00520  2.62E-02  Amino sugar and nucleotide sugar metabolism
Module #24 86 Details
Biological Process:
GO:0006099  3.23E-06  tricarboxylic acid cycle
GO:0006101  3.23E-06  citrate metabolic process
GO:0009060  3.23E-06  aerobic respiration
GO:0045333  3.79E-05  cellular respiration
GO:0015980  9.01E-05  energy derivation by oxidation of organic compounds
GO:0016999  3.95E-04  antibiotic metabolic process
GO:0055114  8.86E-03  oxidation-reduction process
GO:0006091  2.00E-02  generation of precursor metabolites and energy
Details
00020  4.44E-06  Citrate cycle (TCA cycle)
Module #25 85 Details
Molecular Function:
GO:0004576  2.35E-04  oligosaccharyl transferase activity
GO:0005198  4.66E-02  structural molecule activity
Biological Process:
GO:0042886  4.92E-06  amide transport
GO:0045184  4.92E-06  establishment of protein localization
GO:0015031  4.92E-06  protein transport
GO:0008104  4.92E-06  protein localization
GO:0015833  4.92E-06  peptide transport
GO:0046907  5.65E-06  intracellular transport
GO:0071705  6.27E-06  nitrogen compound transport
GO:0016192  6.54E-06  vesicle-mediated transport
GO:0006886  7.04E-06  intracellular protein transport
GO:0051649  7.79E-06  establishment of localization in cell
GO:0034613  1.28E-05  cellular protein localization
GO:0070727  1.30E-05  cellular macromolecule localization
GO:0051641  1.93E-05  cellular localization
GO:0033036  2.90E-05  macromolecule localization
GO:0009100  9.22E-04  glycoprotein metabolic process
GO:0006486  9.27E-03  protein glycosylation
GO:0009101  9.27E-03  glycoprotein biosynthetic process
GO:0043413  9.27E-03  macromolecule glycosylation
GO:0070085  1.10E-02  glycosylation
Cellular Component:
GO:0030663  1.00E-12  COPI-coated vesicle membrane
GO:0048475  1.00E-12  coated membrane
GO:0030117  1.00E-12  membrane coat
GO:0030660  6.15E-11  Golgi-associated vesicle membrane
GO:0030662  6.15E-11  coated vesicle membrane
GO:0005798  1.03E-10  Golgi-associated vesicle
GO:0030659  2.51E-10  cytoplasmic vesicle membrane
GO:0012506  3.22E-10  vesicle membrane
GO:0030135  9.52E-10  coated vesicle
GO:0044433  3.64E-09  cytoplasmic vesicle part
GO:0030126  6.23E-09  COPI vesicle coat
GO:0098796  5.43E-08  membrane protein complex
GO:0030120  7.57E-08  vesicle coat
GO:0044431  2.13E-07  Golgi apparatus part
GO:0005794  9.20E-07  Golgi apparatus
GO:0098805  1.46E-06  whole membrane
GO:0000139  1.53E-06  Golgi membrane
GO:0097708  2.23E-06  intracellular vesicle
GO:0031410  2.23E-06  cytoplasmic vesicle
GO:0031982  4.80E-06  vesicle
GO:0098588  2.01E-05  bounding membrane of organelle
GO:0031090  4.43E-05  organelle membrane
GO:0008250  1.51E-03  oligosaccharyltransferase complex
GO:0042175  3.58E-03  nuclear outer membrane-endoplasmic reticulum membrane network
GO:0017119  4.83E-03  Golgi transport complex
GO:0005783  5.18E-03  endoplasmic reticulum
GO:0030131  1.90E-02  clathrin adaptor complex
GO:0005789  2.89E-02  endoplasmic reticulum membrane
GO:0044432  3.10E-02  endoplasmic reticulum part
GO:0030119  3.53E-02  AP-type membrane coat adaptor complex
GO:0030118  3.76E-02  clathrin coat
Details
04141  1.81E-05  Protein processing in endoplasmic reticulum
00510  2.42E-04  N-Glycan biosynthesis
03013  1.14E-02  RNA transport
Module #26 84 Details
Biological Process:
GO:0006520  1.74E-03  cellular amino acid metabolic process
GO:1901605  2.26E-02  alpha-amino acid metabolic process
GO:1901607  2.26E-02  alpha-amino acid biosynthetic process
GO:0009081  2.26E-02  branched-chain amino acid metabolic process
GO:0009082  2.26E-02  branched-chain amino acid biosynthetic process
GO:0008652  3.72E-02  cellular amino acid biosynthetic process
Cellular Component:
GO:0009570  1.31E-03  chloroplast stroma
GO:0044435  1.31E-03  plastid part
GO:0044434  1.31E-03  chloroplast part
GO:0009532  1.31E-03  plastid stroma
GO:0031976  4.98E-02  plastid thylakoid
GO:0009534  4.98E-02  chloroplast thylakoid
Details
00290  5.15E-04  Valine, leucine and isoleucine biosynthesis
00660  2.95E-02  C5-Branched dibasic acid metabolism
Module #27 83 Details
Details
Module #28 82 Details
Molecular Function:
GO:0004312  9.49E-04  fatty acid synthase activity
GO:0051287  1.51E-03  NAD binding
GO:0050661  8.74E-03  NADP binding
GO:0019829  8.74E-03  cation-transporting ATPase activity
GO:0022853  8.74E-03  active ion transmembrane transporter activity
GO:0042625  8.74E-03  ATPase coupled ion transmembrane transporter activity
GO:0004834  1.15E-02  tryptophan synthase activity
GO:0016885  2.88E-02  ligase activity, forming carbon-carbon bonds
GO:0003989  2.88E-02  acetyl-CoA carboxylase activity
GO:0016421  2.88E-02  CoA carboxylase activity
Biological Process:
GO:0016053  5.76E-04  organic acid biosynthetic process
GO:0046394  5.76E-04  carboxylic acid biosynthetic process
GO:0044283  4.97E-03  small molecule biosynthetic process
GO:0008652  1.33E-02  cellular amino acid biosynthetic process
GO:0009082  2.61E-02  branched-chain amino acid biosynthetic process
GO:0009081  3.42E-02  branched-chain amino acid metabolic process
Cellular Component:
GO:0031975  4.98E-02  envelope
GO:0033180  4.98E-02  proton-transporting V-type ATPase, V1 domain
GO:0031967  4.98E-02  organelle envelope
Details
00061  5.10E-08  Fatty acid biosynthesis
00620  4.91E-07  Pyruvate metabolism
00010  1.10E-04  Glycolysis / Gluconeogenesis
00020  2.89E-04  Citrate cycle (TCA cycle)
00640  1.20E-03  Propanoate metabolism
00300  1.27E-03  Lysine biosynthesis
00780  2.82E-03  Biotin metabolism
00260  2.82E-03  Glycine, serine and threonine metabolism
00261  2.85E-02  Monobactam biosynthesis
00400  6.86E-02  Phenylalanine, tyrosine and tryptophan biosynthesis
Module #29 81 Details
Cellular Component:
GO:0034357  9.60E-04  photosynthetic membrane
GO:0044436  9.60E-04  thylakoid part
GO:0009579  2.04E-03  thylakoid
GO:0009570  2.28E-03  chloroplast stroma
GO:0044434  2.28E-03  chloroplast part
GO:0009532  2.28E-03  plastid stroma
GO:0044435  2.33E-03  plastid part
GO:0009535  3.31E-02  chloroplast thylakoid membrane
GO:0055035  3.31E-02  plastid thylakoid membrane
Details
Module #30 78 Details
Cellular Component:
GO:0044434  6.41E-08  chloroplast part
GO:0044435  6.41E-08  plastid part
GO:0009579  8.46E-07  thylakoid
GO:0034357  2.47E-05  photosynthetic membrane
GO:0044436  2.74E-05  thylakoid part
GO:0009526  3.27E-05  plastid envelope
GO:0009941  3.27E-05  chloroplast envelope
GO:0042651  4.38E-05  thylakoid membrane
GO:0009570  1.09E-03  chloroplast stroma
GO:0009532  1.37E-03  plastid stroma
GO:0031984  1.70E-03  organelle subcompartment
GO:0031967  2.99E-03  organelle envelope
GO:0031975  2.99E-03  envelope
GO:0031976  3.19E-03  plastid thylakoid
GO:0009534  3.19E-03  chloroplast thylakoid
GO:0031969  8.97E-03  chloroplast membrane
GO:0042170  9.79E-03  plastid membrane
GO:0009706  2.85E-02  chloroplast inner membrane
GO:0009528  3.07E-02  plastid inner membrane
Details
Module #31 75 Details
Details
Module #32 73 Details
Molecular Function:
GO:0051082  4.98E-03  unfolded protein binding
GO:0008443  5.39E-03  phosphofructokinase activity
GO:0019200  1.69E-02  carbohydrate kinase activity
GO:0003756  1.72E-02  protein disulfide isomerase activity
GO:0016864  1.72E-02  intramolecular oxidoreductase activity, transposing S-S bonds
GO:0016860  2.30E-02  intramolecular oxidoreductase activity
Cellular Component:
GO:0005783  1.69E-04  endoplasmic reticulum
Details
04141  3.53E-05  Protein processing in endoplasmic reticulum
00010  1.65E-04  Glycolysis / Gluconeogenesis
03060  1.31E-02  Protein export
00030  2.02E-02  Pentose phosphate pathway
00620  8.65E-02  Pyruvate metabolism
Module #33 72 Details
Details
Module #34 66 Details
Details
Module #35 65 Details
Details
00480  2.02E-02  Glutathione metabolism
Module #36 64 Details
Details
Module #37 64 Details
Molecular Function:
GO:0016747  3.28E-05  transferase activity, transferring acyl groups other than amino-acyl groups
GO:0016746  9.40E-05  transferase activity, transferring acyl groups
Details
00941  6.81E-07  Flavonoid biosynthesis
04712  6.81E-07  Circadian rhythm - plant
Module #38 63 Details
Molecular Function:
GO:0061134  2.51E-02  peptidase regulator activity
GO:0004866  2.51E-02  endopeptidase inhibitor activity
GO:0030414  2.51E-02  peptidase inhibitor activity
GO:0061135  2.51E-02  endopeptidase regulator activity
Details
00909  6.85E-02  Sesquiterpenoid and triterpenoid biosynthesis
00900  9.62E-02  Terpenoid backbone biosynthesis
Module #39 62 Details
Details
Module #40 60 Details
Details
Module #41 57 Details
Molecular Function:
GO:0046982  3.22E-36  protein heterodimerization activity
Biological Process:
GO:0031497  4.32E-19  chromatin assembly
GO:0006334  4.32E-19  nucleosome assembly
GO:0006333  4.32E-19  chromatin assembly or disassembly
GO:0034728  4.32E-19  nucleosome organization
GO:0065004  2.69E-18  protein-DNA complex assembly
GO:0071824  2.69E-18  protein-DNA complex subunit organization
GO:0071103  4.46E-18  DNA conformation change
GO:0006325  3.11E-15  chromatin organization
GO:0051276  5.64E-13  chromosome organization
GO:0034622  1.53E-12  cellular protein-containing complex assembly
GO:0065003  3.44E-12  protein-containing complex assembly
GO:0043933  8.00E-12  protein-containing complex subunit organization
GO:0022607  9.84E-11  cellular component assembly
Cellular Component:
GO:0000786  5.73E-53  nucleosome
GO:0044815  1.30E-52  DNA packaging complex
GO:0032993  3.64E-52  protein-DNA complex
GO:0000785  2.17E-48  chromatin
GO:0044427  2.54E-41  chromosomal part
GO:0005694  7.83E-38  chromosome
Details
Module #42 57 Details
Cellular Component:
GO:0071011  1.28E-02  precatalytic spliceosome
GO:0005730  1.49E-02  nucleolus
Details
03040  1.14E-06  Spliceosome
03015  4.96E-03  mRNA surveillance pathway
Module #43 56 Details
Details
Module #44 54 Details
Biological Process:
GO:0090662  3.41E-02  ATP hydrolysis coupled transmembrane transport
Cellular Component:
GO:0033176  3.30E-03  proton-transporting V-type ATPase complex
GO:0016469  1.29E-02  proton-transporting two-sector ATPase complex
GO:0033179  2.37E-02  proton-transporting V-type ATPase, V0 domain
Details
Module #45 53 Details
Details
Module #46 50 Details
Biological Process:
GO:0006457  1.72E-03  protein folding
Cellular Component:
GO:0044435  5.35E-07  plastid part
GO:0044434  3.93E-06  chloroplast part
GO:0009526  2.94E-05  plastid envelope
GO:0009941  2.94E-05  chloroplast envelope
GO:0009532  8.82E-05  plastid stroma
GO:0009570  1.17E-03  chloroplast stroma
GO:0031975  1.38E-03  envelope
GO:0031967  1.38E-03  organelle envelope
GO:0009579  3.75E-03  thylakoid
GO:0031976  5.56E-03  plastid thylakoid
GO:0009534  5.56E-03  chloroplast thylakoid
GO:0031984  1.61E-02  organelle subcompartment
Details
00061  3.04E-02  Fatty acid biosynthesis
Module #47 50 Details
Molecular Function:
GO:0004014  2.53E-02  adenosylmethionine decarboxylase activity
Biological Process:
GO:0006597  1.97E-02  spermine biosynthetic process
GO:0008216  1.97E-02  spermidine metabolic process
GO:0008215  1.97E-02  spermine metabolic process
GO:0008295  1.97E-02  spermidine biosynthetic process
Details
Module #48 48 Details
Biological Process:
GO:0010337  1.81E-02  regulation of salicylic acid metabolic process
GO:0032350  3.15E-02  regulation of hormone metabolic process
Details
Module #49 47 Details
Molecular Function:
GO:0009882  3.79E-02  blue light photoreceptor activity
Details
Module #50 47 Details
Details
Module #51 47 Details
Details
00360  6.37E-03  Phenylalanine metabolism
Module #52 46 Details
Details
Module #53 45 Details
Details
Module #54 44 Details
Details
03040  2.05E-06  Spliceosome
Module #55 43 Details
Details
Module #56 42 Details
Details
Module #57 42 Details
Biological Process:
GO:0009755  1.11E-04  hormone-mediated signaling pathway
GO:0032870  1.33E-04  cellular response to hormone stimulus
GO:0071495  1.33E-04  cellular response to endogenous stimulus
GO:0071310  1.33E-04  cellular response to organic substance
GO:0070887  2.06E-04  cellular response to chemical stimulus
GO:0009719  9.31E-03  response to endogenous stimulus
GO:0009725  9.31E-03  response to hormone
GO:0010033  1.49E-02  response to organic substance
GO:0009742  2.40E-02  brassinosteroid mediated signaling pathway
GO:0071367  2.40E-02  cellular response to brassinosteroid stimulus
GO:0071383  2.40E-02  cellular response to steroid hormone stimulus
GO:0043401  2.40E-02  steroid hormone mediated signaling pathway
GO:0048545  2.40E-02  response to steroid hormone
GO:0009741  4.03E-02  response to brassinosteroid
GO:0009734  4.43E-02  auxin-activated signaling pathway
GO:0071365  4.78E-02  cellular response to auxin stimulus
Details
Module #58 40 Details
Details
Module #59 40 Details
Molecular Function:
GO:0016307  2.18E-03  phosphatidylinositol phosphate kinase activity
Details
04070  1.86E-02  Phosphatidylinositol signaling system
00562  1.86E-02  Inositol phosphate metabolism
Module #60 40 Details
Details
Module #61 39 Details
Details
Module #62 37 Details
Details