LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

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ID Organism Annotation Sequence type RNA-seq data
2 Arabidopsis thaliana (thale cress, thale-cress, mouse-ear cress); col; Araport11: Arabidopsis thaliana, JCVI, Araport11 13 / 132 / 245
3 Arachis duranensis ; V14167; AdV1.1: Arachis Duranensis, Iowa State University, Aradu1.1 3 / 11 / 25
4 Arachis hypogaea (goober, ground-nut, peanut); Tifrunner; AhV1: Arachis Hypogaea, Iowa State University, arahy.Tifrunner.gnm1.KYV3 4 / 33 / 75
5 Arachis ipaensis ; K30076; AiV1.1: Arachis Ipaensis, Iowa State University, Araip1.1 2 / 5 / 19
6 Cajanus cajan (pigeon pea); CcV1: Cajanus Cajan, BGI, C.cajan_V1.0 1 / 4 / 4
7 Cicer arietinum (chickpea, garbanzo); ICC 4958; CaV2: Cicer Arietinum, CSFL, Cicer arietinum ICC 4958 genome v2.0 6 / 33 / 79
8 Glycine max (soybeans, soybean); Wm82; Gm275Wm82a2V1: Glycine Max, JGI, Gmax_275_Wm82.a2.v1 17 / 118 / 319
28 Glycine max (soybeans, soybean); Wm82; Gm508Wm82a4V1: Glycine Max, JGI, Gmax_508_Wm82.a4.v1 17 / 118 / 319
9 Glycine soja (wild soybean); W05; GsW05V1: Glycine Soja, The Chinese University of Hong Kong, W05v1.0 4 / 48 / 149
29 Hordeum vulgare (barley); vulgare L; Hvulgare462r1: Hordeum Vulgare, JGI, Hvulgare_462_r1 8 / 85 / 259
10 Lotus japonicus ; MG20; LjMG20V3: Lotus Japonicus, JCVI, Lotusjaponicus_MG20_v3.0 5 / 16 / 48
11 Lupinus angustifolius (narrow-leaved blue lupine); Tanjil; LaV1: Lupinus Angustifolius, CSIRO-UWA Laboratory for Molecular Plant Pathology and Crop Genomics, lupan.Tanjil.gnm1.ann1.nnV9 1 / 6 / 6
12 Medicago sativa (lucerne, alfalfa); CADL; MsV1NR: Noble research institution Annotation v1.0 (non-redundant) 5 / 86 / 266
13 Medicago truncatula (barrel medic); A17; MtV4.0: Medicago truncatula, JCVI, Mt4.0v1 26 / 253 / 844
25 Medicago truncatula (barrel medic); A17; MtrunA17r5.0: Medicago truncatula, INRA, MtrunA17r5.0-ANR 26 / 253 / 844
26 Oryza sativa (rice); Japonica; Osativa323V7: Oryza Sativa, JGI, Osativa_323_v7.0 5 / 22 / 60
14 Phaseolus vulgaris (string bean, French bean, kidney bean); Pv442V2.1: Phaseolus Vulgaris, JGI, Pvulgaris_442_v2.1 4 / 14 / 42
16 Populus trichocarpa (western balsam poplar, black cottonwood); PtV3.1: Populus Trichocarpa, JGI, Ptrichocarpa_444_v3.1 4 / 32 / 121
27 Solanum lycopersicum (tomato); ITAG3.2: Solanum lycopersicum, JGI, ITAG3.2 3 / 21 / 63
17 Trifolium pratense (purple clover, red clover, peavine clover, rotklee); Tp385V2: Trifolium Pratense, JGI, Tpratense_385_v2 1 / 4 / 4
18 Trifolium subterraneum (sub clover); Daliak; TsuV1.1: Trifolium Subterraneum, Lab of Plant Genome Informatics Department of Plant Genome Research Kazusa DNA Research Institut, TSUd_r1.1 1 / 4 / 12
19 Vigna angularis (red mung bean, azuki bean, adzuki bean); Gyeongwon IT213134; Va: Vigna Angularis, Seoul National Univ, Gyeongwon.gnm3.JyYC 2 / 3 / 4
20 Vigna radiata (mung bean); VC1973A; Vr: Vigna Radiata, Seoul National Univ, VC1973A.gnm6.ann1 3 / 6 / 16
21 Vigna unguiculata (cowpea); Vu469V1.1: Vigna Unguiculata, JGI, Vunguiculata_469_v1.1 2 / 20 / 52