LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

  • [G. soja (gene)]
  • Detail of Experiment mapped on Glycine soja W05 GsW05V1

Details

NameTranscriptome analysis of photoperiodic flowering in soybean.
DescriptionIn order to identify candidate genes that are involved in soybean flowering transition in response to photoperiods, we performed RNA sequencing analysis under different photoperiod treatments. We identified genes exhibiting daily oscillation patterns under different photoperiod treatments, genes under control of maturity loci (E1, E2, E3 and E5), and genes that constitute the soybean flowering gene network. Overall design: RNA sequencing analysis was performed using Williams 82, Clark and four NILs in Clark that are polymorphic for E loci (E1, E2, E3 and E5), as well as the wild soybean Glycine soja, under different photoperiod treatments.
Contact259 ERML, Cropsciences, University of illinois at Urbana Chammpaign, USA
XrefPRJNA219510
Reference
Conditions9
SpeciesGlycine soja
Metadata export .CSV   .JSON

Analysis

Mapped Genomes GsW05V1    
Expression Analysis Expression Profile /  Differential Expression /  Co-expression

Conditions

Name Genotype Mutation Stage Tissue Treatment Level Time Samples Xref Download alignments
afternoon_LD 26 DAP First trifoliate Long Day (16L:8D) afternoon 2:30 pm
  • afternoon_LD_1
  • afternoon_LD_2
  • afternoon_LD_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
afternoon_SD 26 DAP First trifoliate Short Day (10L:14D) afternoon 2:30 pm
  • afternoon_SD_1
  • afternoon_SD_2
  • afternoon_SD_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
afternoon_Shift 26 DAP First trifoliate Shift (LD 3 weeks -> SD 5 days) afternoon 2:30 pm
  • afternoon_Shift_1
  • afternoon_Shift_2
  • afternoon_Shift_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
evening_LD 26 DAP First trifoliate Long Day (16L:8D) evening 10:30 pm
  • evening_LD_1
  • evening_LD_2
  • evening_LD_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
evening_SD 26 DAP First trifoliate Short Day (10L:14D) evening 10:30 pm
  • evening_SD_1
  • evening_SD_2
  • evening_SD_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
evening_Shift 26 DAP First trifoliate Shift (LD 3 weeks -> SD 5 days) evening 10:30 pm
  • evening_Shift_1
  • evening_Shift_2
  • evening_Shift_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
morning_LD 26 DAP First trifoliate Long Day (16L:8D) morning 6:30 am
  • morning_LD_1
  • morning_LD_2
  • morning_LD_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
morning_SD 26 DAP First trifoliate Short Day (10L:14D) morning 6:30 am
  • morning_SD_1
  • morning_SD_2
  • morning_SD_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
morning_Shift 26 DAP First trifoliate Shift (LD 3 weeks -> SD 5 days) morning 6:30 am
  • morning_Shift_1
  • morning_Shift_2
  • morning_Shift_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi