LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

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Transcriptome of wounded tissue exposed to insert Chickpea seeds (C. arietinum var. Pusa 362) procured from the Indian Agricultural Research Institute, New Delhi, India, were grown in the fields of NBRI in winters from December to March. Newly emerged and fully expanded bi-pinnate leaves of eight week old chickpea plants were wounded with a pair of pointed forceps by rapid and repeated pricking while still on the plant. Just prior to wounding, the tissue was exposed to insect saliva obtained from the oral secretions of H. armigera (spread over ......[More] CSIR-NBRI
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global view of transcriptome dynamics during salinity stress in different chickpea genotypes In this study, we aim to present a global view of transcriptome dynamics during salinity stress in different chickpea genotypes. We generated about 600 million high-quality reads from 16 libraries (control and stress samples for two chickpea genotypes for salinity stress at two developmental stages) using Illumina high-throughput sequencing platform. We mapped the reads to the kabuli chickpea genome for estimation of their transcript abundance in different tissue samples. The transcriptome dynam......[More] National Institute of Plant Genome Research (NIPGR) 8
global view of transcriptome dynamics during drought stress in different chickpea genotypes In this study, we aim to present a global view of transcriptome dynamics during drought stress in different chickpea genotypes. We generated about 800 million high-quality reads from 14 libraries (control and stress samples for two chickpea genotypes for drought stress at two developmental stages) using Illumina high-throughput sequencing platform. We mapped the reads to the kabuli chickpea genome for estimation of their transcript abundance in different tissue samples. The transcriptome dynamic......[More] National Institute of Plant Genome Research (NIPGR) 8
A global view of transcriptome dynamics during flower development in chickpea by deep sequencing In this study, we aim to present a global view of transcriptome dynamics during flower development in chickpea. We generated around 234 million high-quality reads for eight flower development stages (ranging from 16 to 40 million reads for each stage) and 91 million high-quality reads from three vegetative tissues using Illumina high-throughput sequencing GAII platform. Because of non-availability of reference genome sequence, we mapped the reads to chickpea transcriptome comprised of 34,760 tra......[More] National Institute of Plant Genome Research (NIPGR) 5
Transcriptome dynamics during seed development in chickpea (JGK3) In this study, we aim to present a global view of transcriptome dynamics during seed development in a large-seeded chickpea (genotype JGK3). We generated about 1.5 billion high-quality reads from 24 libraries (leaf and seven seed developmental stages in three biological replicates) using Illumina high-throughput sequencing platform. We mapped the reads to the kabuli chickpea genome for estimation of their transcript abundance in different tissue samples. The transcriptome dynamics was studied by......[More] Jawaharlal Nehru University
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Chickpea Transcriptome of Abiotic Stress In this study, we aim to present a global view of transcriptome dynamics during various abiotic stresses in chickpea. We generated about 252 million high-quality reads from eight libraries (control, desiccation, salinity and cold stress samples for roots and shoots) using Illumina high-throughput sequencing GAII platform. We mapped the reads to the desi chickpea genome for estimation of their transcript abundance in different tissue samples. The transcriptome dynamics was studied by differential......[More] National Institute of Plant Genome Research (NIPGR)
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