LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

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Name Experiment Genotype Mutation Stage Tissue/organ Treatment Level Time replicates
CombinationXylemfiberVesselRaycells RNA-seq of major tissues ...... 6 months Xylem Combination of xylem fiber, vessel and ray cells 3
Leaf RNA-seq of major tissues ...... 6 months Leaf Leaf 3
Phloem RNA-seq of major tissues ...... 6 months Phloem Phloem 3
PrimaryRoot RNA-seq of major tissues ...... 6 months Primary root Primary root 3
ShootTip RNA-seq of major tissues ...... 6 months Shoot tip Shoot tip 3
StemDifferentiatingXylem RNA-seq of major tissues ...... 6 months Stem differentiating xylem Stem differentiating xylem 3
XylemFiberCells RNA-seq of major tissues ...... 6 months Xylem Xylem fiber cells 3
XylemVesselCells RNA-seq of major tissues ...... 6 months Xylem Xylem vessel cells 3
Control P. trichocarpa responds t ...... black cottonwood leaf P. trchocarpa under well-watered condition 1
Drought-stressed P. trichocarpa responds t ...... black cottonwood leaf P. trchocarpa under water-limited condition 1
ALSC SNP discovery in black co ...... ALSC 4
BELA SNP discovery in black co ...... BELA 4
CNYH SNP discovery in black co ...... CNYH 4
DENA SNP discovery in black co ...... DENA 4
DESC SNP discovery in black co ...... DESC 4
ELAD SNP discovery in black co ...... ELAD 4
GLCA SNP discovery in black co ...... GLCA 4
HIXN SNP discovery in black co ...... HIXN 4
JASP SNP discovery in black co ...... JASP 7
LONG SNP discovery in black co ...... LONG 4
MCGR SNP discovery in black co ...... MCGR 4
MCHB SNP discovery in black co ...... MCHB 4
STKG SNP discovery in black co ...... STKG 4
STKI SNP discovery in black co ...... STKI 4
TAKA SNP discovery in black co ...... TAKA 4
TATA SNP discovery in black co ...... TATA 4
TATB SNP discovery in black co ...... TATB 4
TNZA SNP discovery in black co ...... TNZA 4
TOBA SNP discovery in black co ...... TOBA 4
VNDL SNP discovery in black co ...... VNDL 4