KMC1D is a GPU empowered pipeline, which can speed up the main effect(additive and domiance) kinship matrix calculating.
KMC1D was developed in Linux at the GPU environment of Telsa K80, the host and kernel code are written in C++, and packed as a whole file KMC1D.cu , then compiled through a makefile deployed with NVCC (9.0). KMC1D have been successfully compiled and tested in our linux system. User can freely download, modify and compile the source code without restriction.
NGS technology make it possible to generate a great huge number of SNP data, and finally result GBs scale genotypic marker data. To efficiently load the very huge genotypic data, we developed a moudle, which can work in HTML5 browser and implement the resumable multithreading chunked data uploading.