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Example of sequences in FASTA format

>Seq2 optional comment

Please note:

  • Empty lines are NOT accepted.
  • At present, the sequence input limit for first three (faster) classifiers is 2000 sequences.
  • For PSI-BLAST based prediction, limit is 100 sequences.
  • Due to PSI-BLAST searches against the NR-database and their corresponding conversion to PSSM matrices, the current limit for hybrid-based (best) classifier is 10 sequences / submission. For larger analysis, please contact us.
  • Each sequence should be at least more than 20 residues in length. The shorter sequence might be a "fragment" and so, the prediction will not make any sense.

Detailed description of the FASTA format is available at NCBI.


     Patrick X. Zhao  

© 2012 by The Samuel Roberts Noble Foundation, Inc.