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A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
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Relationship Details
Type: protein-protein interaction GRN ID: re144702 Name: Validated: Y
Direction: Unknown or N/A
Steps: Direct effect
Upstream node(s):
Downstream node(s):
References:
  • Kevei E, Gyula P, Hall A, Kozma-Bognár L, Kim WY, Eriksson ME, Tóth R, Hanano S, Fehér B, Southern MM, Bastow RM, Viczián A, Hibberd V, Davis SJ, Somers DE, Nagy F, Millar AJ. Forward genetic analysis of the circadian clock separates the multiple functions of ZEITLUPE. Plant Physiol. 2006 Mar;140(3):933-45. Epub 2006 Jan 20. PubMed PMID: 16428597; PubMed Central PMCID: PMC1400575.
  • Martínez-García JF, Huq E, Quail PH. Direct targeting of light signals to a promoter element-bound transcription factor. Science. 2000 May 5;288(5467):859-63. PubMed PMID: 10797009.
  • Zhu Y, Tepperman JM, Fairchild CD, Quail PH. Phytochrome B binds with greater apparent affinity than phytochrome A to the basic helix-loop-helix factor PIF3 in a reaction requiring the PAS domain of PIF3. Proc Natl Acad Sci U S A. 2000 Nov 21;97(24):13419-24. PubMed PMID: 11069292; PubMed Central PMCID: PMC27239.
  • Fairchild CD, Schumaker MA, Quail PH. HFR1 encodes an atypical bHLH protein that acts in phytochrome A signal transduction. Genes Dev. 2000 Sep 15;14(18):2377-91. PubMed PMID: 10995393; PubMed Central PMCID: PMC316929.
  • Ni M, Tepperman JM, Quail PH. Binding of phytochrome B to its nuclear signalling partner PIF3 is reversibly induced by light. Nature. 1999 Aug 19;400(6746):781-4. PubMed PMID: 10466729.
  • Ni M, Tepperman JM, Quail PH. PIF3, a phytochrome-interacting factor necessary for normal photoinduced signal transduction, is a novel basic helix-loop-helix protein. Cell. 1998 Nov 25;95(5):657-67. PubMed PMID: 9845368.
  • Oh E, Kim J, Park E, Kim JI, Kang C, Choi G. PIL5, a phytochrome-interacting basic helix-loop-helix protein, is a key negative regulator of seed germination in Arabidopsis thaliana. Plant Cell. 2004 Nov;16(11):3045-58. Epub 2004 Oct 14. PubMed PMID: 15486102; PubMed Central PMCID: PMC527197.
  • Huq E, Quail PH. PIF4, a phytochrome-interacting bHLH factor, functions as a negative regulator of phytochrome B signaling in Arabidopsis. EMBO J. 2002 May 15;21(10):2441-50. PubMed PMID: 12006496; PubMed Central PMCID: PMC126004.
  • Bu Q, Castillon A, Chen F, Zhu L, Huq E. Dimerization and blue light regulation of PIF1 interacting bHLH proteins in Arabidopsis. Plant Mol Biol. 2011 Nov;77(4-5):501-11. doi: 10.1007/s11103-011-9827-4. Epub 2011 Sep 18. PubMed PMID: 21928113.
 
Cross Reference: biogrid:265066  biogrid:265124  biogrid:268304  biogrid:268310  biogrid:268464  biogrid:268472  biogrid:268474  biogrid:268489  biogrid:268631  biogrid:561827  
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